Pseudomonas sp. CFII64, CFII64_14912

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig32, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGTCGAGACCCGGGACTGGATCACTACGCATGTCATGCCGCGTGTCCAGCCAATCGCTGCGCCCAGGAAGCTGGAAGACGCCGGGACTGCACCTGCCTG GCAACTTGCGCTGGAGAAGACCATCCCCACGTTGCGCAAGGGCGGTTTAAAGGCTGCAGTCCGGGAGATGAAGCAGGGACTGCAGAGCGCTCAAGGCGGA CGTGAGCGGTTTTTCTGGCAGTTCAGCCTGGCCCGTCTGTGCCACCAGGCCAAAAAATACGACCTGGCAAGGGCGCAGCTCGAAACCCTTGATCAGCAGC TGCAGCAATCAGGCTTGCATCTCTGGGAGCCGGACCTGGCTCTGGAAGTCCTGCACCTGCTCCACGGCTGTTACGGGTTACTGCCCCAAGGTCACGAGGT GCGGGAGCGCAAGGACGAGATTTATCGCAGGTTGTGCCACTTGGACCTTGAAGTGGTACTCGAATAGGCCCTCGGGTCGTAACAGTGAAGGAGAAAAACT
DNA Sequence for Gene
>CFII64_14912
GTGGCCAAAGAAGGCTCGGTAGCACCAAAGGAACGCATCAATATTACGTTCAAACCCGCCATTGGCGGTGCCCAGGAAGAAATTGAGCTGCCGCTGAAAT TGCTGGTGCTGGGCGATTTCACCCAGCAGGCAGACGAGCGCAAGCTGGAAGACCGCAAGCCCGTCAGCATCGACAAAAACAACTTCGACGAAGTGTTGGC CAACCAGAAGCTGGGCCTGACCTTGAGTGTGTCAAACCGTTTGCAGGACGAAGACGACTCTCAGGAGTTGGCAATGGATCTGCGTATCAACTCGATGAAG GACTTCAATCCGGCAAGCCTTGTGGATCAAGTGCCGGAGATGAAGAAACTGATGGAGCTGCGCGACGCATTGATGGCCCTCAAAGGACCTCTTGGTAATG CTCCGGCATTCCGCAAGGCGATCGAAAGCGTGCTGGAGGATGACGATTCGCGCGCTCGTGTGCTGGGCGAGATCGGTCTGAACGCGCCCGCCCCGAAGGA CGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCTGTAATAGATAAGGAAGCCAATATCATGAGCACCCGTGCAGCACAGCAGAAAAACAGCGAAGCCACCGAGTTCGGCATACTTGACCAGATCATTGCC CAAACCAGCCTGACACCGACCGACGATGCCTATGGCATCGCCAAGCGCGGCGTCGCGGCATTCATCGAAGAATTGCTCAAGCCTCATAACAGCCAGGAAC CCGTCAAAAAAGCCTTGGTCGATCGCATGATTGCCGAGATCGACGGCAAGCTCAGTCGGCAAATGGACGAGATCCTGCACCACCCGGAATTCCAGGCGCT GGAGTCTTCATGGCGTGGCCTGTCGCTGCTGGTTGAGCGCACAAACTTCCGCGAAAATATCAAGATTGAGGTGCTGAACGTCTCCAAGCAAGACTTGCTG GACGACTTCGAAGACTCGCCCGAAGTGATGCAGGCCGGTCTGTACAAACATATCTATACCGCCGAGTACGGTCAGTTTGGTGGCCAGCCAGTTGGCGCGA
Amino Acid Sequence
>type VI secretion protein, VC_A0107 family
MAKEGSVAPKERINITFKPAIGGAQEEIELPLKLLVLGDFTQQADERKLEDRKPVSIDKNNFDEVLANQKLGLTLSVSNRLQDEDDSQELAMDLRINSMK DFNPASLVDQVPEMKKLMELRDALMALKGPLGNAPAFRKAIESVLEDDDSRARVLGEIGLNAPAPKDA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site