Pseudomonas sp. CFII64, CFII64_10326 (rplF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCGCCTGAGCCCGTGTTTTTCATTTGCCCGGAGTTTCTCGGCGATAAGGTGTAGCCGTAAGGCTAATTATTTTGTATTAGGAGCGTCTAGCCCATGAG TATGCAGGACCCGTTAGCGGACATGCTAACTCGTATCCGTAATGCCCAGATGGCTGAAAAGCCCGTCGTAAGCATGCCATCTTCCACGTTGAAGGTAGCT GTAGCCAAAGTCCTGAAGGACGAAGGTTACATTGCGGGTTATCAGATCAGCAGCGAAACAAAACCGCTGTTGTCCATCGAGCTGAAGTACTTCGAAGGCC GTCCAGTCATCGAAGAAGTGAAGCGCGTCAGCCGTCCAGGCTTGCGTCAGTACAAGTCCGTCGATGATCTGCCAAAAGTTCGTGGCGGTCTCGGTGTGTC TATCGTCTCCACCAACAAAGGTGTGATGACGGATCGTGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTGCTTTGCACAGTGTTCTAAGGGGGGATAAGC
|
|
| DNA Sequence for Gene |
>CFII64_10326
|rplF
ATGTCACGCGTAGCTAAGAACCCCGTTAAGTTGCCAGCAGGCGTCGAAGTTAAACTCGTCGGCCAGCAGCTTTCGGTGAAGGGTGCCAAGGGCACTCTAG ATCTGAACATCCATTCGTCTGTTGAAATTGTTGAAGAAGCTGGTGAGCTGCGTTTCGCTGCTCGCAATGGCGATCAACAAACTCGCGCAATGGCCGGCAC CACTCGTGCACTGGTTAACAACATGGTCCAGGGCGTAAGCCAAGGCTTCGAGCGTAAGCTCCAGCTGGTCGGTGTTGGTTATAAAGCGCAAGCAAAAGGC ACAGTGCTGAACCTGGCTCTTGGCTTCTCGCACCCAGTGGATTACGAACTGCCGGAAGGCATCACCGCTGAGACTCCCAACCAGACCGATATCTTCATTC GAGGTATCGATAAGCAGTTGGTTGGTCAAGTGGCCGCTGAGATCCGCGACTTCCGCCGTCCTGAGCCGTACAAAGGCAAAGGTGTGCGTTACGCAGACGA AGTCGTCCGCCGTAAAGAAGCCAAGAAGAAGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCATAGCAAATGACCGACAAGAAAGTTACCCGACTGCGTCGCGCTCGGAAAGCACGCCTGAAAATGCACGAGCTAGAAGTCGTGCGTCTCTGCGTGTAC CGCTCTTCGCAGCACATTTATGCCCAGGTCATCTCGGCCGACGGCAGCAAAGTCCTGGCAAGTGCCTCGACTTTGGACAAAGAACTGCGTGATGGTGCCA CCGGCAACATCGACGCGGCCACTAAGGTTGGCCAGCTGGTCGCTGAGCGTGCGAAAGCCGCCGGTGTATCGCAAGTGGCTTTTGACCGTTCTGGCTTCAA GTACCACGGCCGCGTCAAGGCGCTGGCTGATGCTGCTCGTGAAGGCGGGCTGGAGTTCTAAGTTATGTCAAATAACGACCAAAAACGCGACGAAGGCTAC ATCGAGAAGCTGGTTCAAGTTAACCGCGTTGCCAAGACTGTAAAAGGCGGCCGTATCTTCACTTTCACCGCGTTGACCGTGGTTGGTGATGGTAAAGGGC
|
|
| Amino Acid Sequence |
>50S ribosomal protein L6
MSRVAKNPVKLPAGVEVKLVGQQLSVKGAKGTLDLNIHSSVEIVEEAGELRFAARNGDQQTRAMAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKG TVLNLALGFSHPVDYELPEGITAETPNQTDIFIRGIDKQLVGQVAAEIRDFRRPEPYKGKGVRYADEVVRRKEAKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|