Pseudomonas sp. CFII64, CFII64_04555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGATGCGGTGTTCAATGTGTATGAATCGCTGTTCATCGAGCCGCCCACCAATCAGCCGGTGCAGGTGACGTTACTCGACAATCCGCAGGTCAAGGCCA GCGGCAAGGTGCGCGAAGTGACGCCTGCGGTGTCTGCCGAAACCGGCACGCTGCAAGTGAAAATCGGCCTGAGCCAGTTGCCGGCCGGCATGGATCTGGG GGCGGTGGTCAGCGTGGCGTTGAGCGCGCCGGGCAAGGCCAGCGTTGAATTGCCATGGTCGGCGCTGACCAAGGGCTTGGGCGAGCAATTGGGCCAGCCA GCGGTGTGGTTGGTGGACGATCAGGGCAAGGTGCAACTGCGTGGGGTTACCGTCGGACGTTATCTGACGGCCAAGGTGATCATTACCGACGGGCTGCAGG GCGGCGAAAAAGTCGTGGTCGCCGGTGGGCAGTTGTTGCACCCCGACATGCAGGTCGAAGTGGCTGATGCCGAGCCAAAGCAAACGGCAGGAACGCAACC
|
|
| DNA Sequence for Gene |
>CFII64_04555
ATGAAACGTCTTTCCTGCATCCTGCTGATCAGCCTGTTGAGCGGCTGCGCCAAGGAAGAGCCCGCGCCGGAACCGGTGCGGCCAGTGTTGTTCGTCGAGG CCAAATCCCTGACCGAAGAAAGTCTGGGGCGCTTTGCCGGCAATATCGAAGCCCGCTACGAAAGCACGCTGGGCTTCCGTGTCGGCGGACGCATTGCCCG GCGCAACGTCGATGTCGGCAGCGAAGTGGAGAAGGGTGCCTTGCTCGCCACCCTCGACCCTACCGATCAACAGAACAATGTGCGCGCCAGTCAGGGCGAT CTGGCGCGGATCGAGGCGCAGTGGATCAACACCCAGGCCAATGCGCGTCGCCAGCAGGAGTTATTCGACCGTGGCGTCGGCGCCCAAGCCCAACTGGACA TCGCGCTGACGGACCTGAAAACCACCGGCTCGTCTCTGGCCCAGGCTCGCGCGGCGTTGCAGCAGGCGCAAGATCAGCTCAGCTACAGCGAGTTGCGCAC CGATCACGCCGCCGTGGTCACCCGTTGGCAAGTCGAAGCGGGCCAGGTGGTGACCGCCGGACAGGAAGTGGTCACCCTGGCGCGGCCCGACATCAAGGAA GCGGTGATCGATTTGCCGGCGACTTTGGCCGAACAGCTGCCGCCAGGCGTCGAATTCAAGGTCGCCAGCCAGCTTGACCCGATCATCAGCACCACCGCCA CGCTGCGGGAAATCGAGCCCCAGGCCGAGCGCTTCACCCGCACCCGGCGCGCGCGCCTGACCCTGACCGATACGCCCGCTGCGTTTCGTCTTGGCACGGC AATCAGCGTCACCCTGAGTTCGACCATCGCGTCGCGTACCGAACTGCCGATCAATGCGCTGCAGGAGGTCGACGGCAAAGCGCAAATCTGGATCGTCGAC ACGCAGAACCAGACCGTCAACCCTCGTGCAGTCAATGTCGTGAGTCGCGACAGTGACTCGTTTGTGCTGAGCAACGGCGTCAAGCCTGGCGAACGGGTGG TCAGTGCTGGCGTCAACAGCCTCAAACCCGGCCAGAAAGTCAAAGTCGATAAGGAAAGCCCGCGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGGGAATTTCAACCTGTCCGAATGGGCCATCAAGCACCAGTCATTTGTCTGGTACCTGATGTTCGTCGCGCTGCTGATGGGGGTTTTTTCGTACATCAA CCTGGGTCGCGAAGAAGATCCGTCCTTCACCATCAAGACCATGGTCGTACAAACCCGATGGCCAGGTGCGACGATGGATGAAACCCTGGAGCAAGTCACC GACCGCATCGAGAAAAAACTCGAAGAGCTGGACTCGCTGGACTATGTGAAAAGCTACACGCGACCCGGCGAGTCGACGATCCTGGTCAACTTGCGCGACA CCACCGACGCCAAGGCGATTCCGGAAATCTGGTATCAGGTGCGCAAAAAGATCGACGATGTTCGCAGTCAGTTCCCCCAAGGCATGCAGGGCCCGTTTTT CAATGACGAGTTCGGCGATGTGTACGGCTCGATCTATGCGTTCACCGCCGATGGCTTCTCCATGCGTCAGCTGCGCGATTATGTGGAGCAAGTCAGAACC
|
|
| Amino Acid Sequence |
>RND family efflux transporter MFP subunit
MKRLSCILLISLLSGCAKEEPAPEPVRPVLFVEAKSLTEESLGRFAGNIEARYESTLGFRVGGRIARRNVDVGSEVEKGALLATLDPTDQQNNVRASQGD LARIEAQWINTQANARRQQELFDRGVGAQAQLDIALTDLKTTGSSLAQARAALQQAQDQLSYSELRTDHAAVVTRWQVEAGQVVTAGQEVVTLARPDIKE AVIDLPATLAEQLPPGVEFKVASQLDPIISTTATLREIEPQAERFTRTRRARLTLTDTPAAFRLGTAISVTLSSTIASRTELPINALQEVDGKAQIWIVD TQNQTVNPRAVNVVSRDSDSFVLSNGVKPGERVVSAGVNSLKPGQKVKVDKESPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|