Pseudomonas sp. CFII64, CFII64_04157
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCTTCGAAGAAAATCTGCGACAACGTCGGATCCTGGGTGCCCAGGGTCACCATCAAGCGATGCAGCTCGATGGATTCGGGGCTGTTGATCAGCCTGT TGAAACTGCGGGCGATGTTCAGCAGCAGCGTTTCCACCGGCAATTCGCTGTGCAGATCAAAAAACAATTCAGGCATCTGTTCTTCGCAGCGGGCGACCAC TGCCGAGGAAAACAACGTCTCTTTGTCCGTGAAATGGCTGTAGACCGTGAGCTTGGAAACGCCCGCTTCTGCGGCAACCGCATCCATGCTGGTACTGGCG TAACCGTTGCGCACGAACAGGTTTTTCGCCGCGTCGAGAATGGCCTGGCGTTTTGCCAGATCCTTGGGGCGGCCGGGGCCGGAGGGTGGTAATGAAGTTT CAGGCATATTCGTTTTAATAATGTACTGGTGAGTTTGATAATTTTTAATATACTCGCCAGTACAATTATTCCAAGTCTCAATTGCGAAGGTGTTGTCACC
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| DNA Sequence for Gene |
>CFII64_04157
ATGTTACGCAATGCACTCTCGGTCGTGCTGCCTGTCACCCTCATTTCGTTGCTCGCCGCGTGCGGCCAAGAGGTCGCTGCGCCGGTTTCCGTGCGTCCGG CGATGGTGGTGCAGCCATTGCCGTCATCCCAGTCCATGGACAGCTACCCCGGCGAAGTGCGGGCGCGGTTTGAGCCGGACCTGGCATTTCGCATTGCGGG CAAAGTCAGCAAGCGCTGGGTTGAAGAGGGCCAGCGGGTCAAGGCCAATCAGCCCCTGGCCGAACTGGATGCACAGGATGTTCGCCTGCAACTGGAAGCC ATCCGCGCCCAGGTGGCGGCAGCCGAGGCCAATTTGCAACTGGTGCGCTCCGAACGTGATCGCTACAAGACGCTGATGGAACGGCAGATGGTCAGCCGCT CGCAATTTGATAATGCCGAAAACCTCTATCGTTCCGGCGAAGCGCGGCTCAAGCAGATCAGGGCCGAGCTGACCGTTGCTGACAACCAGACCAGCTATGC CGTGCTGCGCGCGCCGCAGGACGGCGTGGTTGCCAAGCGCCTGGTGGAAGTCGGCCAGGTGGTCGCAGCGGGGCAAACGGTATTTACCCTGGCGGCGGAT GGCGAGCGTGAAGTGCTGATCAGCCTGCCGGAACAGAATTTCTCGCGCTTCAAGGTCGGCCAGCCGGTCGCGGTGGAATTGTGGACCCAGCGCGAGCAGC GTTTCCCGGGCCGGATTCGCGAGCTTTCACCGGCCGCCGATCCCCGTTCGCGCACCTTCGCGGCACGCATTGCCTTTGCTGGCGGCAAGATCCCCGCCGA ACTGGGGCAGAGCGCCCAGGTGTTCATCCAGGCCGAACAGGTCGTGCCGTTGGCCGTGCCGCTGTCGGCGGTGACGTCGGAGAATGGCGTGCATTACGTC TGGCGTGTCGAGGCCGGCAATACGCTGAAACGCGTGACGGTCAGGCTCGGGCCTTACGGGCAGGAATCGGTGCCGGTGCTCGACGGGCTGGCCGCCAGCG ACTGGATCGTGGCCGCCGGTGTGCATGTGCTGCATGAGGGTGAGCAGGTACGCCCGGTGGATCGCGAGAACCGCGCGGTGAAACTGGCGGCGAAGGAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGGATGCATTTCAATCTTTCCGAATGGGCGCTGCGCAATCGGCAAATCGTCCTGTACCTGATGATCGTTCTGGCTGTCGTCGGTGCGCTTTCCTACA CCAAGCTGGGGCAGAGTGAAGATCCACCGTTCACGTTCAAAGCCATGGTGATTCGTACCCTGTGGCCGGGCGCCAGCGCGGAAGAAGTGGCGCTGCAAGT CACGGATCGCATCGAGAAGAAGCTGATGGAAACCGGGGAATACGAGCGCATCGTTTCGTTCTCGCGACCCGGTGAGTCGACCGTGACCTTCGTGACCCGC GATTCGATGTTCTCCGCTGCGCTGCCCGAACTGTTCTACCAGATCCGCAAGAAAATCAGCGACATCCGCCAGAACCTGCCACCGGGGATCCAGGGCCCGT TCTTCAACGACGAATTCGGCACCACGTTCGGCAACATCTACGCGCTGACCGGCAAAGGCTTCGATTATGCGGTGCTCAAGGACTACGCCGACCGCATCCA
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| Amino Acid Sequence |
>secretion protein HlyD
MLRNALSVVLPVTLISLLAACGQEVAAPVSVRPAMVVQPLPSSQSMDSYPGEVRARFEPDLAFRIAGKVSKRWVEEGQRVKANQPLAELDAQDVRLQLEA IRAQVAAAEANLQLVRSERDRYKTLMERQMVSRSQFDNAENLYRSGEARLKQIRAELTVADNQTSYAVLRAPQDGVVAKRLVEVGQVVAAGQTVFTLAAD GEREVLISLPEQNFSRFKVGQPVAVELWTQREQRFPGRIRELSPAADPRSRTFAARIAFAGGKIPAELGQSAQVFIQAEQVVPLAVPLSAVTSENGVHYV WRVEAGNTLKRVTVRLGPYGQESVPVLDGLAASDWIVAAGVHVLHEGEQVRPVDRENRAVKLAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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