Pseudomonas sp. CFII64, CFII64_03072
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTGCTGGAAATCCTGCGTGACTATCGCGACCGTCTGCCCGCCGCAGTCGTGCACTGTTTTACCGGCGAACAGCGGGCCTTGTTCAGTTATCTGGATC TGGATCTGCACATCGGCATCACCGGCTGGATCTGCGATGAACGGCGTGGCACGCACCTGCATCCGCTGGTCCGCGACATTTCCCGTGGCCGCTTGATGCT GGAAAGCGATGCGCCCTATCTGCTGCCGCGTACCTTGCGACCCAAGCCGAAAAACGGCCGCAACGAGCCGGCCTATCTGCCCGAAGTGTTACGCGAAGTG GCCCTGCATCGGGGTGAAACCGAGGAAGATCTGGCCGCACACAGCAGCCGCTGCGCACGCAGCTTTTTCGACTTGCCCCAGCTTGCGGACGCTCACGTCT AACGTGCGCTTGACCCAAATCAACATATTCTCTGATCATTGGCCCATCATGGTGGCACCTTGCCGCACGTCTACCCACGACTAACCAAAGAAGACCTCTT
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| DNA Sequence for Gene |
>CFII64_03072
ATGGGCACCTGGCTTAGCAATCTTTCGCTGAAGTACAAGTTCTGGGCCGTGAACGCGGTCGCCTTCATTACCACGCTGTTGCTGGTGATCTATGCCTCGC AACTCGAACAACAGGCACGCGTCGATGGCGCTCGTCAGTCCGCCCAGGCGCAAGCGCGACTGATCGGTTCGTGGCCTGCCGGGCAAGCGGTTCCCGCTGG CAATGAGGTGCTGGTGTTCCCTCAGGGTCAAACGCCGAAGTTCAAGGAGCAGTCATTGCCGCAACTGGCCAGCGGCACTGGCTGGGTCGAGCTGAACCTG CAAACGTCCACCGATGACAACACGCTGATCGGCGCTCAGGTCGTGGCGCGTGCCGACGGCCAGCGCGTTGCGATCCTGGCCTTCGCGCCAAGCGTGACGC AAGTTCTGCAAGCCCGCTTCGTCAACTACGCCGTTGCCGTATTCGTGCTGATGCTGGCCATGCTCTGCGCATCGCAATTACTGATTCGCTTCCTGCTCAG TCAGCTCAACACGCTCAAGGATGTGATGCTGCACGTCGAGAAAAGCGGCGATCTGTCGGCCCGAGTGCCGCTGACTGGCGATGATGAAGTGGGCCAGATG GCCAAGGCGTTCAACGCGATGCAGGCCGGTTATCAGCGCGTGGTCAACATTGTCGCCCAGACCGCTGCACGTCTGGATCAGGGCGCTGCGCATCTGGCGG CGGGCATGAATGACGTGCGCCACGGCATGCTCGGCCAGCAGAGCGAAACCGATCAGGTTGCCACCGCGATCAACGAGATGTCCGCCACCGTTTATCACAT TGCCCAACACGCCAGTACCACGCGTGACCAGTCACAGACTGCCGACACCCTGGCCGGCGGCGGCAAGGCCGTGGTCGAGCGCGTTCAATTGTCCATCGCG GGTTTGTCCACCGGCGTGCAGCAAACCGCCGAGATGATCCAGCGCCTGGCCGAAGACAGCCAGAAAATCAACGGCGTGGTCGGCGTGATTCACAGCATTG CCGAACAGACCAACCTGTTGGCGCTCAACGCGGCTATCGAGGCCGCACGGGCCGGTGAAATGGGCCGTGGCTTCGCCGTCGTGGCCGATGAAGTGCGCAA CCTGGCCAAGCGGGTGCAGTCCTCCACCGACGAAATCACCACCATGGTTTCCGCGCTGCAGGCCGGAACTCGCGACGCAGTGGATTTCATGCAGGACAGC TCGTTCAAGGCCGACGAGTGTGTGCAACAGGCTCAGGAAGCTGGCGATGCACTCGCCGCTATCGCCGGTGCGGTTGCACAGATGCGCGAGAGCAACACGC AGATCGCCGTCGCCGCGCAGCAGCAAAGTCAGGTTGCCGAAGACATGAATCGCGCCGTGGTCAGCATTCGTGATGTGACGGAACGCACCGTGAACCAGAC CGTGGATTCTGCCACCACCAGCGGCGAGCTTGCGACTCTGGCCGGAGAGCTGAGCAAGGCCATCGGTCAACTCAAGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCAACGGCCCTATTGCACCGATAGTCAGGCTTGATTCGCGGCCTTCACGAGTCAGGCCTACTCTTCAGGTATCGATTTGATGCAGTGAAGAGGACAGC AGTAATGGCCAAGCGATTAACCAATCTCCACATGTGGTCATGGCACGCCGACAATCATCGTCCTCCGGCCAACTTCGTATTGAATGTCATCGCGCGACCG CTGTTTATCGTCGCGGCGCTGCTGATCTTCGACGGCCTGATTTCCTGCAGCTTTTCATCGCTGGCAATTGGCGTGATCGGCTTGATTGCGGGCCTGGGGA TTCAGCGGCACGGGCAGTAAGCCCCGCTGGAGCGAGGCTTGCCCGCGAAGGCATTTTGTCAGGCGAAATATTTGCTGCACATGCGCCGACGCCTTCCCGG ATAAATCCGGTCCTACAGAATCGCGTCGTTTTCGGGGTTGTGCGTCTCCTACCCAAATACCGTCACCGTCTGCCGACTGATCGCTATCAATTCTCCGGCG
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| Amino Acid Sequence |
>methyl-accepting chemotaxis transducer
MGTWLSNLSLKYKFWAVNAVAFITTLLLVIYASQLEQQARVDGARQSAQAQARLIGSWPAGQAVPAGNEVLVFPQGQTPKFKEQSLPQLASGTGWVELNL QTSTDDNTLIGAQVVARADGQRVAILAFAPSVTQVLQARFVNYAVAVFVLMLAMLCASQLLIRFLLSQLNTLKDVMLHVEKSGDLSARVPLTGDDEVGQM AKAFNAMQAGYQRVVNIVAQTAARLDQGAAHLAAGMNDVRHGMLGQQSETDQVATAINEMSATVYHIAQHASTTRDQSQTADTLAGGGKAVVERVQLSIA GLSTGVQQTAEMIQRLAEDSQKINGVVGVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQSSTDEITTMVSALQAGTRDAVDFMQDS SFKADECVQQAQEAGDALAAIAGAVAQMRESNTQIAVAAQQQSQVAEDMNRAVVSIRDVTERTVNQTVDSATTSGELATLAGELSKAIGQLKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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