Pseudomonas sp. CFII64, CFII64_00490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCGGGCAGCGCTTCCTGGAAATCTGGTCGGGACTGCCGGTGCTGTATCTGCTAATCATTCTCGCCAGCTTCGTCCAGCCCAACTTCTGGTGGCTGCTG GGCATCATGCTGCTGTTTTCCTGGATGAGTCTGGTGGACGTGGTGCGCGCCGAATTCCTCCGTGGGCGCAACCTGGAATACGTGCGCGCCGCCCGGGCGC TGGGCATGGAGAACGGCGCGATCATGTTTCGCCATATCCTGCCCAACGCCATGGTCTCGACCATGACGTTCATGCCCTTCATCCTGACCGGCGCCATCGG CACCCTGACGGCGCTGGATTTCCTTGGCTTCGGCTTGCCAGCTGGCTCGCCATCACTGGGCGAACTGGTGGCACAGGGCAAATCCAACCTGCAGGCCCCG TGGCTCGGCATCAGCGCCTTCGCCGTGCTGGCCTTGATGCTCAGCCTGCTGGTGTTCATCGGTGAATCCGCCCGCGACGCTTTCGACCCAAGGAAATGAG
|
|
| DNA Sequence for Gene |
>CFII64_00490
ATGAACAATGACAATCTGATCGAGATCCGCGATCTGGCCGTCGAGTTCGTGGCGGGCGAAGGCTGTCAGCGCGTGGTCGAAGGCATCAACTTTGATATCC GCCGTGGCGAAACCCTCGCGCTGGTGGGTGAAAGTGGCTCCGGCAAATCCGTGACGGCGCATTCGATCCTGCGCCTGCTGCCCTACCCGCTCGCCCGTCA CCCAAGCGGCACCATTCGTTATGCCGGTCAGGATCTGCTGACCCTGAGCGAGAAAAAACTGCGGGCGATCCGTGGCAATAAAATCGCCATGATCTTTCAA GAGCCGATGACCTCGCTCAACCCACTGCAATCCATCGAAAAGCAGATCAACGAGGTGCTCGGCCTGCACAAAGGCCTGATGGGCAAGGCGGCCACATACC GCACTCTGGAGCTGCTGGAGCTGGTAGGCATACCCGAGCCGCAAAAAAGACTCAAAGCCCTGCCACACGAGCTCTCAGGCGGCCAGCGCCAGCGTGTGAT GATTGCCATGGCCCTCGCCAACGAGCCTGAGCTGTTGATCGCCGACGAGCCGACCACCGCGCTGGACGTCACGGTGCAGCTGAAAATCCTCGAATTGCTC AAGGAATTGCAGGCGCGGCTGGGCATGGCGCTGCTGCTGATCAGCCACGACTTGAACGTGGTCAAGCAAATAGCCAATCGCGTATGTGTCATGCAGCGCG GTTGCATCGTCGAACAAGCATCCTGTGAGGAGCTGTTCCGTTCACCTCAGCATCCGTACACGAAAATTTTGCTGAGCGCGGAGCCCAGCGGCGGTCCGGC GGACAATCCGGCCGGCGCGCCATTGCTGGAAGTGGAGGACCTGCGGGTCTGGTTTCCGATCAAGAAAGGTCTGCTCAAACGGACCGTGGATCATGTCAAG GCGGTGGACGGCGTTCAGTTCAGTCTGCCTCAAGGGCAAACGTTGGGGATTGTCGGCGAAAGCGGCTCGGGTAAATCGACCATGGGCCTGGCGATTCTCC GGCTGATCGGTAGCCAGGGCGTCATACGGTTTCAGGGCAAGACGCTAGACTGCCTGTCGCAGCAGGAGATTCGTCCGTTGCGCCGACAGATGCAGGTGGT GTTCCAGGACCCGTTCGGCAGCCTGAGCCCGCGCATGTCAGTGAGTGAAATCGTCGGCGAAGGCTTGCGTATCCATCGCCTGGGCACCGCTGCCGAGCAG GAGATGGCGATCATCGCGGCGCTCAGGGAAGTCGGTCTGGATCCGGAAACCCGGCACCGCTACCCCCACGAGTTTTCCGGTGGGCAGCGGCAGAGAATCG CCATCGCCCGGGCATTAGTGTTAAAACCGGCGCTGATTTTGCTGGACGAGCCCACTTCGGCGCTCGACCGGACAGTCCAGCGTCAAGTAGTGGAGCTGCT GCGGTCACTGCAAACCAAGTACAACCTGACGTATTTGTTTATCAGCCATGACCTGGCGGTCGTCAAAGCGCTTAGCCATCAATTGATGGTGGTCAAGCAG GGCCAAGTGGTCGAACAGGGTGACGCGCAAGCTATCTTTGCCGCACCTCAACATCCTTATACACAGCAGCTGCTGGAAGCCGCCTTTTTGGCGCCGGTAG CTGTCGATTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTGAAGAGGAACAACACATGGGTTTTCTCGCCGGTAAGCGCGTCCTGATCGTCGGTGTCGCTAGCAAACTGTCCATCGCATCCGGCATCGCTGCCGCCA TGCATCGCGAGGGTGCAGAGCTTGCCTTCACCTATCAGAACGACAAACTCAAAGGTCGTGTCGAAGAATTCGCCGCGGGCTGGGGCTCCAACCCTGAACT GTGCTTCCCTTGCGACGTCGCCAGCGACGAAGAGATCGCCAAGGTCTTCGAAGCACTGAGCAAGAAATGGGACAGCCTGGACGTGATCGTTCACTCCGTA GGCTTCGCACCGGGCGACCAGCTCGACGGCGACTTCACCCAGGCCACCACCCGCGAAGGCTTCCGCATCGCCCACGACATCAGCGCCTACAGCTTCGTGG CCCTGGCCAAGGCCGGCCGCGAAATGATGAAAGGCCGCAATGGCAGCCTGCTGACCCTGTCGTACCTGGGCGCAGAGCGCACCATGCCCAACTACAACGT
|
|
| Amino Acid Sequence |
>ABC transporter
MNNDNLIEIRDLAVEFVAGEGCQRVVEGINFDIRRGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGTIRYAGQDLLTLSEKKLRAIRGNKIAMIFQ EPMTSLNPLQSIEKQINEVLGLHKGLMGKAATYRTLELLELVGIPEPQKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNVVKQIANRVCVMQRGCIVEQASCEELFRSPQHPYTKILLSAEPSGGPADNPAGAPLLEVEDLRVWFPIKKGLLKRTVDHVK AVDGVQFSLPQGQTLGIVGESGSGKSTMGLAILRLIGSQGVIRFQGKTLDCLSQQEIRPLRRQMQVVFQDPFGSLSPRMSVSEIVGEGLRIHRLGTAAEQ EMAIIAALREVGLDPETRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKQ GQVVEQGDAQAIFAAPQHPYTQQLLEAAFLAPVAVD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|