Pseudomonas sp. CF149, CF149_21138 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig43, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCTTTGAGCAGACCCTGAGTGAGTTGCTTGATCTCGAAGGGTTAACGCTGAGCTATTACCGTGGTTGGGACAAAGACCGTGAGTTGAGTGCAGTACTCG CTGCGTCTGTCCACCGGGACCAGCAAATGGGGCATACCCAGGCCGGGCCACAACGTGCGGATTTGCGCCTTAAGCTGGGCGCGAATAACGCGGCAGATAT CTTGTCGCGGGGGCAGCAGAAGTTGGTGGTTTGCGCGTTGCGCATCGCTCAAGGGCACTTGGTCAGCCAAGCCCGGCGTGGCCAATGTATTTATCTGGTA GATGACTTGCCCTCCGAACTGGATGAGCAGCATCGCAACGCACTGTGTCGCTTGTTGGAAGACTTACGCTGCCAGGTATTCATTACCTGTGTAGACCACG AATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCCCTGTTCCACGTGGAACAGGGCTGTATCACCCAGACCCACGACCATCGGGAGTGAAGGCA
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| DNA Sequence for Gene |
>CF149_21138
|gyrB
TTGAGCGAAGAAAACACGTACGACTCAACGAGCATTAAAGTGCTGAAAGGCCTTGATGCCGTACGCAAACGTCCCGGTATGTACATTGGTGATACTGACG ATGGCAGCGGTCTGCACCACATGGTGTTCGAAGTAGTCGACAACTCCATCGACGAAGCGCTGGCTGGCCATTGCGACGACATCACCATCACGATCCACCC GGACGAATCCATTACGGTGCGCGATAACGGCCGCGGTATTCCGGTGGATGTGCATAAAGAAGAAGGCGTCTCTGCAGCCGAGGTCATCATGACCGTACTG CACGCCGGCGGTAAGTTCGATGACAACTCCTACAAAGTATCCGGCGGATTGCACGGTGTAGGTGTTTCGGTGGTAAACGCCCTGTCCGAACTGCTGGTCC TGACGGTACGTCGCAGCGGCAAGATCTGGGAACAGACCTACGTCCACGGTGTTCCTCAGGCGCCGATGGCCATCGTTGGCGAGAGCGAAACCACCGGCAC TCAGATCCATTTCAAACCGTCTGACCAGACGTTCAAGAATATCCACTTCAGCTGGGACATCCTGGCCAAGCGTATTCGTGAGCTGTCCTTCCTGAACTCC GGTGTGGGTATCGTCCTCAAGGACGAGCGCAGCGGTAAGGAAGAGTTGTTCAAGTACGAAGGTGGTCTGCGTGCATTCGTTGACTACCTGAACACCAACA AGACGCCGGTCAACCAGGTGTTCCACTTCAGTGTTCAGCGTGAAGACGGGATTGGCGTAGAAATCGCCTTGCAGTGGAATGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCGCAGCGTGATGGCGGTACGCACTTGGTGGGCTTCCGCTCTGCCCTGACGCGTAACCTCAACACCTACATTGAAGCT GAAGGCCTGGCCAAAAAACACAAAGTCGCCACCACCGGTGATGACGCTCGTGAAGGTTTGACCGCAATCATCTCGGTGAAAGTGCCGGATCCGAAGTTCA GCTCCCAGACCAAAGACAAGCTGGTTTCTTCCGAAGTGAAGACCGCTGTTGAACAGGAAATGGGCCGGTTCTTCTCCGACTTCCTGCTGGAAAACCCGAA CGAAGCCAAGCTGATTGTCGGCAAGATGATCGACGCCGCCCGTGCCCGTGAGGCCGCGCGTAAAGCCCGTGAGATGACCCGTCGTAAAGGCGCGCTGGAC ATCGCAGGCTTGCCCGGCAAACTGGCCGACTGCCAGGAAAAAGACCCGGCGCTGTCCGAACTGTATCTCGTCGAAGGTGACTCTGCTGGCGGTTCCGCCA AGCAGGGTCGTAACCGTCGTACCCAGGCCATCCTGCCGTTGAAGGGTAAAATCCTCAACGTTGAGAAAGCCCGCTTCGACAAGATGATCTCTTCGCAAGA AGTAGGCACCTTGATCACCGCACTGGGCTGTGGCATTGGTCGCGATGAGTACAACATCGACAAACTGCGCTACCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGTACCCTGCTGTTGACCTTCTTCTTCCGTCAGTTGCCGGAGTTGATCGAGCGTGGCTATATCTATATCGCTCAGCCGC CTTTGTACAAAGTGAAAAAAGGCAAGCAAGAGCAATACATCAAAGACGACGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTTGAAGATGCCAGCCT GCACTTGAACGATGAAGCCCCTGGCATCTCGGGTGAGGCGCTGGAGCGCCTGGTGTACGACTTCCGCATGGTAATGAAGACCCTCAAGCGTTTGTCGCGC CTGTACCCTCAGGAGTTGACCGAGCACTTCATCTACCTGCCGGCCGTTACCCTTGAGCAGTTGGGCGACCACACTGCCATGCAAGAGTGGATGGCCAAGT ATGAAGAGCGTTTGCGCCTGGTTGAAAAATCGGGTCTGGTCTACAAAGCCAGCCTGCGCGAAGACCGTGAGCGTAATGTCTGGTTGCCAGAGGTCGAACT GATCTCCCACGGCCACTCGACCTTTATCACGTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAAACCGTAGTCACCCTGGGCGCTCAATTGAGCACT CTGCTGGACGAAGGCGCGTACATCCAGCGTGGTGAGCGCAAAAAAGCTGTCACGGAGTTCAAAGAAGCACTGGACTGGTTGATGGCCGAAAGCACCAAGC GTCACACCATCCAGCGCTACAAAGGTCTGGGTGAAATGAACCCGGATCAGCTCTGGGAAACCACGATGGACCCAAGCGTGCGCCGCATGCTGAAAGTCAC CATCGAAGACGCGATCGGCGCCGATCAGATCTTCAACACCTTGATGGGCGACGCCGTAGAACCGCGCCGTGAGTTCATCGAGAACAACGCACTGGCAGTG TCCAATTTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGTGGTGTAGTGCAGTCAAAAAAAGGCCAACGCTTAGCGTTGGCCTTTTTTTGGTTTAAAAATTCTCTATGGCGCCAACAAAACCCCCTGCTCTTCCTG GCACAACTCCAGCAAGAAATCCCAAACAACCCTCAACCTTACCGACTTGTGCAGCTCACGGCGGGTGCTGATCCAGTAGCTGCGTTGCACTGATTCCTCG GGCAATACACGCACCAGCTCCGGGTCGTTACTGGCCATGTAGTTGGGCAGTACGGCGATACCGAGCCCTGCCCGGGCCGCTTGTTGCTGGGCAATGACGC TTGTGCTGCGAAAGGTCACGGTCGGGGTGCGGCAAAAGTTGTTGAGAAACAGCAGCTCCTGGCTGAACAGCAGGTCGTCGACGTAGCCGATCCAGTAGTG ATTGGCCAGGTCATCACGGTTGTTCAAGGGCGGCGCCTTGTCGAGGTAAACGCGGCTGGCATAGAGCGCCAGGCGGTAGTCGGTGAGTTTGCGGGTTATC
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITITIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESETTGTQIHFKPSDQTFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVDYLNTNKTPVNQVFHFSVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRFFSDFLLENPNEAKLIVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLNDEAPGISGEALERLVYDFRMVMKTLKRLSR LYPQELTEHFIYLPAVTLEQLGDHTAMQEWMAKYEERLRLVEKSGLVYKASLREDRERNVWLPEVELISHGHSTFITFNRDFFGSNDYKTVVTLGAQLST LLDEGAYIQRGERKKAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRREFIENNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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