Pseudomonas sp. CF149, CF149_19526
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCTCGCCCGCGATGGTGCACGGGATGCGGTTTTCAACGTGTATGAATCGCTGTTTATCGAGCCGCCCAAAGACCCCACCGTGCAGGTCACGCTCTTGA GTAATCCGACGATCAAGGTCAACGGCCAGATCCGCGAAATCACGCCCACCGTGGCCGCGCAAAGCGGCACGCTGCAAATAAAGGTGCAACTGGATGCATT GCCCAAAGGCATGGACCTGGGTTCGATTGTCAGCGTCAACCTGACACCGCCTCCCAGTCGCAGCATCGAGTTGCCGTGGTCGGCACTGACCAAGGACATC AGCGAGCCCGCAGTGTGGATCGCCGACGATCAAAACAACGTGCGCCTGCAGCGGGTCAAGGTGGGGCGCTACCTGACCGGCAGCGTAATCGTCAGCGAAG GCCTCAAGGATGGGGAAAAAGTCGTGGTTGCAGGCGGGCAACTGTTGCACCCCGGCATGAAGGTTGAAATCGTCCCTGCTCCAGCCGAAGGAGTTCAACT
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| DNA Sequence for Gene |
>CF149_19526
ATGAGGCGTTTGTGGATGATGCCCTTAGCGGCCGCCCTGTTGGTGGGCTGTTCTGAAAAACAGCCGCCCGAACCCATTCGACCGGCGCTGTATGTGGTGG CGCAACCCGAACTGGCGCAAGACTTGGGACGCTTTGCCGGCAATATCGAAGCTCGCTACGAAAGCACCCTGGGCTTCAGGGTTCCGGGGCGCATCGTGCG CCGGTATTACGACGTGGGTGCGGTGGTCAAACAGGGGGACATTCTGGCCAACCTCGACCCCACCGATCAGCAAAATCAGTTGCGTTCGGCTCAGGGCGAT CTGGCCAAGGTGCAAGCGCAATTGATCAACGCCAAAGCCAACGCCCGTCGCCAGCAAGAGCTGTTCGACCGTGGCGTGGGTGCCCAGGCTCAGCTGGACA CGGCACAAGCTGATCTCAAGACCACCCAGGCCTCGATGCAGCAGGCGCAGGCGGCGGTGAGTCAGGCCCAGGATCAGCTCAGTTACTGCAACCTGCGCGC CGACCATGACGCCGTGATCACTCAATGGCAGGCCGAGGCCGGGCAAGTGGTAAGCATCGGCCAGGAAGTCGTCACTCTGGCACGACCTGAAATCAAAGAG GCGGTGATCGACCTGCCGGGACCGCTGGCCGAGGCCTTGCCTAAAGACATCGAGTTCCGCGTCGCTGGTCAGCTCGACCCGAACATCAACACCAGCGCCC ATATCCGCGAAATCGCTCCGCAGGCCGACAGCGCAACCCGCACACGACGTACCCGCCTGACACTGGACTCGACCCCGGCGGCGTTTCGTCTTGGCAGCTC AGTCAGCGTGACCGTCAGCAGCCCGATCGCCGAGCACTTTCAGTTACCACTGACGGCCATGCAAGAAACCGATGGCCACACCCGCGTGTGGATCATCGAC ACGGCAACCCATGCCGTCAGCCCCCGTGATGTCACGGTTCTGCGGCGCGATGCACAAAGCGTGTTGTTGTCTGGCGGCATAAAAGCCGGCGACATGGTGG TCAGTGCAGGCGTACACAGCCTCACCCCTGGGCAGAAAGTCAGACTCGATAAGGAAAGCTCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGGAAGTTCAACCTGTCCGAGTGGGCCCTGAAACATCAGTCATTCGTCTGGTATTTGATGTTTGTGGCGGTGGTGGCCGGGATTTTCTCGTACATCAA TCTGGGGCGTGCAGAAGACCCGTCCTTCGCCATCAAAACCATGGTAATCCAGACCCGATGGCCCGGCGCCACAGTCGATGAAACCCGGCTGCAGATCACC GATCGCATCGAGAAAAAGCTCGAAGAGCTGGACTCCCTCGACTACGTGCAAAGCTATACCCGCCCCGGTGAGTCAACGGTATTTGTGTTCCTCAAGGACA CCACCAAGGCCGATGCCATCCCGAATATCTGGTATGAGGTGCGCAAGAAAATCGGCGACATCCGCGGCGACTTTCCCCAAGGTATTCAAGGCCCGGGGTT CGACGATGAGTTCGGTGATGTCTACGGCACCATCTTCGCCTTTACCGGCGACGGCTTCACCATGCGCCAGCTGCGCGATTACGTGGAGCAGGTGCGCACC
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| Amino Acid Sequence |
>RND efflux transporter
MRRLWMMPLAAALLVGCSEKQPPEPIRPALYVVAQPELAQDLGRFAGNIEARYESTLGFRVPGRIVRRYYDVGAVVKQGDILANLDPTDQQNQLRSAQGD LAKVQAQLINAKANARRQQELFDRGVGAQAQLDTAQADLKTTQASMQQAQAAVSQAQDQLSYCNLRADHDAVITQWQAEAGQVVSIGQEVVTLARPEIKE AVIDLPGPLAEALPKDIEFRVAGQLDPNINTSAHIREIAPQADSATRTRRTRLTLDSTPAAFRLGSSVSVTVSSPIAEHFQLPLTAMQETDGHTRVWIID TATHAVSPRDVTVLRRDAQSVLLSGGIKAGDMVVSAGVHSLTPGQKVRLDKESSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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