Pseudomonas sp. CF149, CF149_16836
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCTGCACTCTATCAGCCTCGCAGGCGTGTCATGCAACAGCGATAGAGCCTGGCGACGGGGTACCGCCGTCGACATGTACATGCCCACCCTGGGGGAAA GCGCACACTACCCGGGCTATATAGCCTGGTGCGAGAAACAGCCGAAGGGCTACCGCATAGGCGTTGCCCTGATCGACGAACAAACACTGTTCGGCGCGCG CATGGGCGAACAGGTATGCCAGATCGAACACTATTCACGCCTCCAGCAACGACAAAACTCATGCCCGCAAGACCTGGAAGCCCTTGCCCTGGAATGGGTC AGTCATCACGCCACCGAGTTCTCTCAGGCAACCCTGGATCACGCGATGGCGCAGGCAGTACTGGATTAAAGCTGCGCCTGCCCATTGTCGAATAACCGGA TAACGCGTTAAGGTTCGGCTCCCCGATGCGCTCAATCAAGCTGTGCTCCGCCGCACGGGGATCGCTGGCGGCCGGCACCCGTGACCTGACGAGTAACACG
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| DNA Sequence for Gene |
>CF149_16836
ATGGCTGATTTACCGATCGACGACCTAAACGTTGCCTCCAACGAAACCCTGATCACACCTGAACAGCTCAAGCGCGAAATGCCTTTGCGTGAAGCTGCTC TGCAGACGGTGACCAAAGGACGCGAGGTGATTCGCAACATCCTGGATGGCACTGACCATCGACTGTTCGTTGTCATCGGGCCTTGCTCGATCCACGATAT CAAGGCTGCCCACGAGTATGCCGAGCGTCTGAAAGTGCTCGCCGCAGAAGTCAGCGATACGCTGTATCTGGTCATGCGCGTTTATTTTGAAAAGCCACGC ACCACCGTAGGCTGGAAAGGCCTGATCAACGACCCGTACCTGGACGACTCGTTCAAGATCGAGGACGGCCTGCATATCGGCCGTAAGCTGCTGCTGGATC TGGCTGAAATGGGCCTGCCAACGGCCACCGAAGCCCTCGATCCGATCTCCCCGCAGTACTTGCAGGACCTGATCAGCTGGTCGGCCATTGGCGCTCGCAC CACCGAGTCGCAGACCCACCGCGAAATGGCCTCTGGCCTGTCTTCGTCGGTAGGCTTCAAAAACGGCACCGATGGCGGCCTGACCGTTGCGATCAACGCC CTGCAGTCGGTTTCCAGCCCGCATCGCTTCCTGGGTATCAACCAGGAAGGCGGCGTGTCGATCGTGACCACCAAGGGTAACGCCTACGGCCACGTGGTAT TGCGCGGTGGCAACGGCAAGCCGAACTATGATTCGGTCAGCGTTGCGCTCTGCGAGCAGGCACTGAACAAGGCGAAAATCCGCCCGAACATCATGGTCGA CTGCAGCCACGCCAACTCCAATAAAGACCCGGCCCTGCAACCGCTGGTGATGGAGAACGTGGCCAACCAGATCGTCGAGGGCAACCAGTCGATTATCGGC CTGATGGTCGAAAGCCACCTGAACTGGGGCTGCCAGGCAATCCCTAAAAACCTCGAAGACCTGCAGTACGGCGTGTCGATTACCGATGCCTGCATCGATT GGGCATCTACCGAAAGCACCCTGCGCAGCATGCGTGCCAAGCTCAAGGATGTGCTACCAAAGCGTGATCGCGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGCACTAACACGTGGGAGCGGGCTTGCCCGCGATGGCAGCTACACGGTCTGGCTGAATGACCGTGTCGCCGGCATCGCGAGCAAGCCCGCTCCCACGT TGGTTTCAGATTATGTGTTCTCCAGCAACCGCTGACTCGCCACCATCTGTTCCCGCCCCCTGGCCACCATCCAGCGATGAAAGTCGCGACAGTGCGCCCG GTCAAACGCCCCCTTTGCCCCCACCAGAAAATACGCCGAAGGCAATGGCAAGCCGTGGGCGAACGGCATGATCAGGCGCCCCTGCGCCAACTCATCCGCC ACCATCGAATACTGCGCCAGCACCACGCCCTGCCCCGCCAGCGCCGCATGGATCGCCATGGACGACAGTGAATAGACCCGGTAACCATCGCGCAGGCCTT CACAGTCCACCTGCCGTGACTTGAACCAGTCGCGCCAGGACGGCGGCGAGGCAAACTTGGGCAGCCAGTCAATCGACAACAAGGGATACGCCAATAAATC
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| Amino Acid Sequence |
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPIDDLNVASNETLITPEQLKREMPLREAALQTVTKGREVIRNILDGTDHRLFVVIGPCSIHDIKAAHEYAERLKVLAAEVSDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKIEDGLHIGRKLLLDLAEMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSSVGFKNGTDGGLTVAINA LQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDSVSVALCEQALNKAKIRPNIMVDCSHANSNKDPALQPLVMENVANQIVEGNQSIIG LMVESHLNWGCQAIPKNLEDLQYGVSITDACIDWASTESTLRSMRAKLKDVLPKRDRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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