Pseudomonas sp. CF149, CF149_16786
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCATTGCTCCTTCGCGGGTCTCGAACCGTGACCCCTACCTTACTGTTGTTTTTCCGCCGAGGGAACTACTACGCCGTCACGCACGAGCTGCCAGCACAG AATGTGTGAACAGGCCTGATGGAAGAGTAGTCACTCTCAATGCAAATGTTCAGTTCATGGGGTCGGCTGCTGCCAGCAAATCAAGCCAGCTCAAACGTTT CTTCAGCCCGACAACCTTAAAGAAGCCCTGAACATTTTTCGGAAGGTTGAGGCTATGACGTAGAACCACACTTAAAGTCACGTTGTGCCATCACGAGCAT GCCGCTGACTGCACTCCAAACTGACTGTTTTACAAGCACAATCAGTTAAATCTAGCCGATCAACAATGCTTGCCAAATATTTTTTTTGGTTCTTGCGCTA GGTCATTTTACTTACTACAAGTAATGGGTACTATGTACGCCGGCTGTTTCCTCACTTTGAAGGAGCAGCTTTAATTAGAAAGTCCTTGAAGGGGAACACG
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| DNA Sequence for Gene |
>CF149_16786
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCATTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGTATCTAAAGAAACTGAAGCCCGTCTGACTGCAA CTGAAGACGCAGCAGCTCGCTCCCAGGCTCGTGCTGACGAAGCCTACCGTAAAGCTGACGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA TGAAGCAAACGAGCGCGCTCTGCGCATGCTTGAAAAAGCAAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGTCCTTCGGGATTATTATCAAGCCGACCTATTTATAGGTCGGCTTTTTTATTGCCTGCCGGTTACTAAGCAGTCAATAAAAAGCCGCCGAAGGTATTA ACCGCGGCGGCTTTTTAATGCGCGTTTTTAGTGCGTTTTACTGCACGTAGTCCAAAGACTGGCCACCCACCACTGTGGAATTGGATATGCCGATTTCTGC AGGTATACCCGTCTCGGCACCCACAACAGGGAACGCTTTGTCCTTGTCGATCTGGATGCTGTTTTCCAGGTCTTTGTGCTTGAGCAAAAAGTTCATGAAT GCAGCGTATTTGTTCTGCAAGTCTTCAGGGGTCAAGTGGGACTTGTCGCTGACAGCCAACAGGGAGCCATCCTTGACGTTCAGGGGCTCATGCACCTCAA GGAAGACCTTCCCGCCGCTGACACCAATCTTGTACGGCTCGTTAATGATTCGCACAGGCGTCCCGACAGGCACCATGCGCGACATTTCAAGCACGTTCTG
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| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSVSKETEARLTATEDAAARSQARADEAYRKADEALAAAQKAQQTADEANERALRMLEKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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