Pseudomonas sp. CF149, CF149_09943
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTAACCCGGCGCAGCAGCACTCGTTCATCATCACCGAAGAACTGGCGCCAACGGTCAGCCTCGAAGACTTCAGCCTCAACTGGATCAAGCAGCCGCCAC AGCCAAACCTCAAGCATGCGCTGATCGCCGAAGTGGCGCGCATGACGGGCATGATGCACCGCGCCGGGGTTAACCATCGCGACTGCTATATCTGCCACTT TTTGCTGCACACCGACAAACCGGTTACAGCCCAGGCCTTTCGTTTGTCGCTCATTGATCTGCACCGGGCCCAGGTTCGACCGGTCATCAGCAAACGCTGG CGCAACAAGGACCTGGCTGCACTGTATTTTTCTGCACTGGATATCGGCCTGACCCAACGGGACAAGCTGCGTTTCCTGCGGGGTTACTTCCAGATGCCGC TGCGTCAAACCCTTCGCGAAGAAGCCCGCCTGCTGGCATGGCTGGAAGGCAAGGCGAGCAAACTCTACGAACGCAAACTGCGTTATGGGGATGCACTGTA
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| DNA Sequence for Gene |
>CF149_09943
ATGGCGGGTTGGAATCTTGAACCCGCTTACAGCGCACTGGCGTCTGATTTTGGCAGTCTGGAAGCGGTATTTGCCCTCCAGGGCGAGCACCTGACCCGCG ATCCTCTTTCGGAAGTGATCCGTGTGCAGCGCGATGGCGTCAATTATTACGTCAAGCGTTACACCGGTGCGGGCAAGGGCTTGCGCCGCTATTTGGGCCG CCCTCGGGTCAAATCCGAATGGCAGAACCTCAAACGCTTCGACAAGTGGGGCATTCCCACCGCCGAAGTCGTGGCCTGGGGGCTTGAGCGCAGTGGCTTT GCCTACTCCCGTGGCGCCATGATCACCCGTGAACTGCCCAATACCCGCGATCTGTCCGAACTGGCGGACCACCATGATCCCCTGCTCAAGGACCGTGCCT GGGTCGATTGCGTCAGTCGCCAGTTGGCGAAGTGCACCCGGATCATGCACAACCATCGTTTTACCCATAACGATCTGAAGTGGCGAAACCTGCTGGTCGA CGATCAGCCCAAGCTGTTTTTGATCGACTGCCCGAACGGTGACTTCTGGCGCGGTTTCTGGCTCAAGTACCGCATCACCAAAGACCTGGCGTGCCTCGAC AAAGTGGCCAAGTACCATTTGTCCTACACCCAGCGTTTGCGTTTTTATTTCCAATACACCGGGCGCACTACGCTCAATGCGGCGGACAAGGAGCGTGTTC GTCATATCGTGCGTTTTTTTGAGGGCCGGGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATTTTTTAGCGGATGCGGATCGGGCTTTGCTTGAGCGCAACGGACTGGCTGACTTCGATGCGCTGTGGGCTGTGCAACTGGAAGCCGTGGACGAGCC CAACACCAGCGGCGGTGGCTGGAGCAGCGTGTTTCGCATGGACCTCGAAGGCCAGGGCTTTTACCTCAAGCGTCAAAGCAACTACCTGACCCGTACCCTG CACCGGCCATTGGGCGAGCCGAGCTTCGCACGAGAATTTCGTAATATTCAGCGTTATCAGCACATGGGTATTCCAGCGCTGGAAGCGGTGTTTTTTGGCG AGCGAAAAGTGCCTGGCGAACATCGCGCGGTGCTCATGACCCGTGCGCTGGATGGCTGGAATGACCTCGATTCGTTGCTTGAACAATGGCCGCAATTGAC CACTGAGCAGCAGCAGGCAATTTTGCGTGAATGCGGCCTGTTGGCGCGTCGCCTGCACGCTGCGCGTCAGGTACATGGCTGTTTTTATCCCAAGCACATC
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| Amino Acid Sequence |
>putative lipopolysaccharide core biosynthesis protein
MAGWNLEPAYSALASDFGSLEAVFALQGEHLTRDPLSEVIRVQRDGVNYYVKRYTGAGKGLRRYLGRPRVKSEWQNLKRFDKWGIPTAEVVAWGLERSGF AYSRGAMITRELPNTRDLSELADHHDPLLKDRAWVDCVSRQLAKCTRIMHNHRFTHNDLKWRNLLVDDQPKLFLIDCPNGDFWRGFWLKYRITKDLACLD KVAKYHLSYTQRLRFYFQYTGRTTLNAADKERVRHIVRFFEGRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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