Pseudomonas sp. CF149, CF149_07554 (rplF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCTCGCCTGAGCCCGTGCTTTTTAAGCATTGAGTCACTCGGCGACAGTTGTAGCCGCAAGGCTAATTCTTTTTGTATCAGGAGCGTCTAGCCCATGAG TATGCAGGACCCGTTAGCGGACATGCTAACTCGAATCCGTAATGCCCAGATGGCTGAAAAGTCCGTCGTAAGCATGCCATCTTCCACGTTGAAGGTAGCT GTAGCCAAAGTTCTCAAAGACGAAGGTTACATCGCGGATTATCAGATCAGCAGCGAAATCAAACCACTGCTGTCTATCGAGCTGAAATACTTCGAAGGCC GTTCGGTTATCGAAGAAGTTAAGCGCGTTAGCCGTCCAGGCCTGCGTCAGTACAAGTCCTCCGAAGATCTGCCGAAAGTTCGTGGCGGTCTTGGTGTGTC TATCGTCTCCACCAGCAAAGGTGTGATGACGGATCGTGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTTTGCACTGTGTTCTAAGGGGGGATAAGC
|
|
| DNA Sequence for Gene |
>CF149_07554
|rplF
ATGTCACGCGTCGCTAAGAACCCCGTTAAGCTGCCAGCTGGTGTCGAAGTAAAATTCGCCGGCCAACAGCTTTCGGTGAAGGGTGCCAAGGGCACTCTAG AACTGAACATCCATTCGTCCGTTGAGATTGTTGAAGAAGCTGGTGAGCTGCGTTTCGCTGCTCGCAATGGCGATCAACAAACTCGCGCAATGGCTGGTAC CACTCGTGCGTTGGTAAACAACATGGTCCAAGGCGTAAGCCAAGGCTTCGAGCGTAAGCTCCAGCTGGTCGGTGTTGGTTACAAAGCGCAAGCAAAAGGC ACAGTGCTGAACCTGGCTCTTGGCTTCTCGCACCCAGTGGATTACGAATTGCCGGAAGGCATCACCGCTGAGACTCCTAGCCAAACCGATATCCTGATCC GGGGTATTGATAAGCAGCTGGTAGGTCAGGTGGCCGCTGAGATCCGCGGTTTCCGTCCGCCAGAGCCTTATAAAGGCAAGGGTGTACGTTACGCGGACGA AGTCGTCCGTCGTAAAGAAGCCAAGAAGAAGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCATAGCAAATGACCGACAAAAAAGTTACTCGCCTGCGTCGCGCTCGCAAAGCACGTCTGAAAATGCACGAACTAGAAGTCGTGCGTCTCTGCGTGTTC CGCTCGTCGCAGCATATATACGCCCAGGTCATCTCGGCCGACGGCAGCAAAGTCCTGGCAAGCGCCTCGACTTTGGACAAAGAACTGCGTGATGCTGCCA CTGGCAACATCGACGCGGCCACAAAGGTTGGCCAGCTGGTCGCTACGCGTGCAAAAGCCGCTGGCGTCTCGCAGGTGGCTTTCGACCGCTCTGGCTTCAA GTACCACGGCCGCGTGAAAGCGCTGGCTGAGGCTGCTCGTGAAGCTGGGCTGGAGTTCTAAGTTATGTCAAATAACGACCAAAAGCGCGACGAAGGCTAC ATTGAGAAGCTGGTTCAAGTTAACCGCGTAGCCAAAACCGTTAAAGGCGGCCGTATCTTCACTTTCACCGCGTTGACCGTGGTTGGTGATGGTAAAGGGC
|
|
| Amino Acid Sequence |
>50S ribosomal protein L6
MSRVAKNPVKLPAGVEVKFAGQQLSVKGAKGTLELNIHSSVEIVEEAGELRFAARNGDQQTRAMAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKG TVLNLALGFSHPVDYELPEGITAETPSQTDILIRGIDKQLVGQVAAEIRGFRPPEPYKGKGVRYADEVVRRKEAKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|