Pseudomonas sp. CF149, CF149_06819
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTTGCGATAGCTGAATAATGGATGACGTAAACGGCCTACCGGCCTGACGAAGAACCTGTTTTAAAAATTGGCTCAGCAAGAAGCCGTTAGCCTTTTCAG GATCGTCAGGCGCGACTCTCATCATGGCGCGGGTGAATCATCCGGTAATCCCCCCTGAAAAAAGTACGCATCAGAAGTAGAATTTTCTCCTGACCGGATC AAGGAAATTTTGCGTGAAGACATCGCGTTTTTCAGACAGTCAAATCATGGCCATTCTCAAGCAAGCAGAGGCTGGAACCCCAGCCCCAGAGCTATGCCGT GAGCACGGCATCAGTTCGGCCACGTTCTATAAGTGGCGTACCAAATTCGGTGGCATGGACGCCTCGCTAATGGCTCGTTTACGTGAGCTGGAGGAAGAAA ACCGGCGGCTTAAAAAAATGTATGCCGAAGAGCGCCTCAAAGCCGAAATCATCCAGGAAGCCATGGCAAAAAAGTGGTGATGCCATCTCGGCGACGAGAG
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| DNA Sequence for Gene |
>CF149_06819
ATGGCGCAGGAGGTGGTTCGCTCAGGTCGGTGCAGTATCAAGCTGGCGTGCTTGGCCTTCAGGGTCAGCACCACGTGCTATCGCTATCAGCCGCGTTTGG CGTATGAAAACGCCGAGATTGCCGATCATTTAATCCGCCTGACACACAACCAGCGAAACTGGGGCTTCGGCTTATGCTTTCTGTACCTGCGCAACGTCAA AGGCTATCGCTGGAACCACAAGCGGGTGTACCGGATTTACCGCGAGCTGGAACTGAATCTGCGTATCAAGCCGCGCAAACGTATTGTGCGCGAGAAGCCC GAGCCGCTGGCTGTTCCTGAAGTCAGCAACCACTGCTGGTCGATGGATTTCATGCACGACCAATTGGCGGACGGACGCAGCTTTCGAGTTTTCAATCTGA TCGACGACTTCAACCGCGAAGCCCTGAGTATGGAAATTGATTTTTCGCTTCCGGCTGAACGTGTGGTGCGAGCGCTGGATCAGGTCATTGAGTGGCGCGG GAAGCCACAAGTCATCCGCAGTGACAACGGCCCGGAATTCATCAGTGCCAAACTCACGGGTTGGGCTGAAAAACGGGGCATTCGTTTGGACTATATTCAG CCGGGCAACCCGCAGCAAAACGCTTACGTCGAGCGCTATAACAGCACAGTACGTTACGACTGGCTGGGGCATTACTTGTTTGGATCGATAGCGGAAGTTC AGAATTACGGCACAAGCTGGATCTGGACATACAATCACGAGCGCCCGAATATGGCCCTCGGCGGCATAACCCCTAAACAGAAATTGGCCCTGGTGGCCTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTCTATTTTTGACGAGTATTAAAAATGGGGGGATTACCATTCACCCTTGGGTCTTCTTTGTTGGCTGCCACTAACCCCTATTCCGCGCTCATTTCCATT ACCGGACTTAAGGTGCCTAGCCACGCGACGAGGCAAATTATGACGATCGCCATTGTAAATTCCAGCGTCATGCTGCGGCGCAATGCATTAACTGCAACAG AATATTCTCCGTTGCGAACTGACTTTTCTAGTACCGGGCTTAAGTGGAAGCGGTTGAGCGCGGCTAACACGATCATTCCGGCAAAGAGCAAGGTTTTCAA AAATAGAAGTTGGCCATAAGTACTGAGCATCACTTCATCGAGGTTTGGTCCAACGATAAATAGGTAATTGACTATTCCAGTGATGCTTATGATTGCCACA ATCACTCCGCCGGCCGACTCAAAGCCAGTCAATACCCGAGCAAGAATTTGTGCTTCCTGCTCGCTTTTGAGCGATTTTAAACGCAGTAGTAGGGCAAATG
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| Amino Acid Sequence |
>ISxac2 transposase
MAQEVVRSGRCSIKLACLAFRVSTTCYRYQPRLAYENAEIADHLIRLTHNQRNWGFGLCFLYLRNVKGYRWNHKRVYRIYRELELNLRIKPRKRIVREKP EPLAVPEVSNHCWSMDFMHDQLADGRSFRVFNLIDDFNREALSMEIDFSLPAERVVRALDQVIEWRGKPQVIRSDNGPEFISAKLTGWAEKRGIRLDYIQ PGNPQQNAYVERYNSTVRYDWLGHYLFGSIAEVQNYGTSWIWTYNHERPNMALGGITPKQKLALVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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