Pseudomonas sp. CF149, CF149_04481 (flgC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTGTAAAAACTGGCACGGGGTTTGCTCTATCCCTGTCATGTAAAGCCTGAATCACATTCTCAGGTCAGCCCACAAAGGTTTTCCGACATGAGCATCAG CTTCGATAAAGCGCTTGGTATCCATGAGCAAGCCCTGGGCTTTCGCGCTCAGCGCGCTGAAGTACTGGCCAACAATATCGCCAACGCCGATACACCGAAC TACAAAGCTCGGGATCTGGACTTTGCCTCGGTGCTCGCCGCACAGAGCGACAAAAACCAGAGCGGCGCTTTTGCGTTGAACAAGACCAACACTCGCCATA TCGAAGCGCAGGGCCTGAGCAGTGGCGACGAGTCGCTGCTGTACCGCACCCCGATGCAACCCTCGATCGACCAGAACACCGTGGATGCTCAGTTGGAGCA ATCGAACTACGCAGAGAATGCGGTCAACTTCCAGGCCAGCTTCACCCTGCTCAACAGCAAATTCAAAGGGCTGATGTCGGCCCTGCGCGGGGAGTAATTC
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| DNA Sequence for Gene |
>CF149_04481
|flgC
ATGTCTCTATCCAGTGTTTTCAATATTGCCGGTAGTGGCATGAGCGCCCAGACCACGCGTCTGAACACCGTGGCCAGCAACATCGCCAACGCCGACACCG TGTCTTCGAGCATCGACCAGACCTACCGTGCCCGTCATCCGGTGTTCGCCACCGTGTTTGAAGGCGCGCAAAGCACCACCGGCGGCTCGCTGTTCCAGAA CCAGGACGCTGCAGGCCAAGGTGTACAAGTGCTGGGTGTGGTTGAAGACCAAAGCGAGCTTCAGGCCCGTTACGAGCCTAATCATCCTTCTGCAGACGCC AAGGGCTATGTGTACTACCCCAACGTCAATGTGGTTGAAGAAATGGCTGACATGATTTCTGCCAGCCGTTCGTTCCAGACCAACGCCGAGTTGATGAATA CCGCCAAAACCATGATGCAGAAGGTCCTGACCCTCGGTCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAGGGGCGACGCAAATGAGTGTGACCGATTCCACCAGCGGCATGACCCTTAACCAGGTGCTTGCCAACTCAGCCCAGGCCAAGACCACCGATACCAGTC TGGCGGCGGCCTCCAAGGCTGCGTCCGGGAACACGGCGCTGGGCAAGGATGCGTTCCTGCAACTGCTGGTTACCCAACTGAAAAACCAGAACCCGCTGGA CCCGCAGGACAACACTGCGTTCGTCGCGCAACTGGCCCAGTTCAGTAGCCTGGAAGGCATCACCACGCTTAACGATACGGTGACTTCTCTCTCGGGCAAT TTCCAGTCTTCGCAAGCCTTGCAGGCCTCGTCCCTGGTGGGTCGCTCGGTGATTGTGCAAACCGGTGAAGCTTACGTAGACCCTGCCAGCGAAAAACCAT TCAACGGCACCGTGGTGGTCCAGGACGCCAACTCCAATCCCGTGATCAGCATTACCAATGCGGACGGTGAAGTGGTTCGCACGATCGACATGGGCACCCA
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| Amino Acid Sequence |
>flagellar basal body rod protein FlgC
MSLSSVFNIAGSGMSAQTTRLNTVASNIANADTVSSSIDQTYRARHPVFATVFEGAQSTTGGSLFQNQDAAGQGVQVLGVVEDQSELQARYEPNHPSADA KGYVYYPNVNVVEEMADMISASRSFQTNAELMNTAKTMMQKVLTLGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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