Pseudomonas sp. CF149, CF149_01252 (fabZ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGACACGCTGATCGGTAATGGCGTCAAGCTGGACAACCAGATCCAGATCGCGCACAACGTTCAGATCGGTGACCATACGGCTATGGCCGCCTGTGTAGG GATTTCCGGTAGCACTAAAATCGGCAAGCACTGCATGTTGGCGGGGGGTGTCGGTTTGGTGGGGCACATTGAAATTTGTGACAATGTGTTCTTGACTGGC ATGACGATGGTGACCCACTCGATTACCGAGCCCGGTGCCTACTCTTCCGGTACCGCAATGCAGCCAGCCGCTGAGTGGCGCAAAAGTGCGGCACGTATTC GTCAGTTGGACGATATAGCCCGGCGGTTGAAACAACTGGAAAAGCGCGTCGGTAAGTGACCCCCGGCGGTAATGCTTCTTCAAAAGGCTAATACAATTTC CATATCAAGAGTGCAGAACCTCTGGTTTGCTTCCTTGATTTGCTAGAGGAGCGCGCCTTAGTCGCGCGCGCCCAATCTTTATTACAGGCTTCCCCACGAA
|
|
| DNA Sequence for Gene |
>CF149_01252
|fabZ
ATGATGGACATCAACGAGATTCGCGAATATCTGCCCCACCGTTACCCGTTCCTGCTGGTGGATCGAGTGGTGGATCTGGATGTCGAGAACAAGCGCATTC GTGCCTACAAGAATGTCAGCATCAATGAGCCCTTTTTCAATGGTCACTTCCCGGCGCACCCGATCATGCCCGGCGTGTTGATCATTGAAGCCATGGCTCA GGCTGCTGGCATCCTTGGCTTCAAGATGATGGACCTCAAGCCGGCTGACGGTACGCTCTACTACTTCGTAGGCTCCGATAAGCTGCGCTTCCGTCAGCCC GTGCTGCCAGGCGATCAACTGATCCTTGAGGCCAAGTTCTTGAGCTGCAAGCGCTCCATCTGGAAGTTTGAGTGCCAGGCAACGGTTGACGGCAAGCCGG TATGCTCGGCTGAAATCATCTGTGCGGAACGCAAACTATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTTGATTGACCCTCGCGCAATCATCGATCCGACGGCCATTTTGGCCGACGACGTCGAGGTCGGCCCTTGGTCGATCGTCGGCGCTGGTGTGGAAATCGG CGAGGGGACAGTGATTGGGCCGCATGTGATTCTCAAAGGCCCAACCAAAATCGGTAAGCACAATCGTATCTACCAGTTTTCTTCGGTAGGCGAGGACACG CCTGATCTCAAGTACAAGGGTGAGGAAACTCGCCTGGTGATCGGTGACCACAACGTTATTCGTGAAGGGGTCACCATTCACCGCGGAACGATTCAGGATC GCGCCGAAACCACCTTGGGTGATCACAATCTGGTGATGGCCTATGCCCATATCGGGCATGACAGCGTCATCGGTAACCATTGCATTCTGGTCAACAACGC CGCGCTGGCGGGCCATGTGCATATGGGGGACTGGGCGATCCTGTCAGGTTTTACACTGGTGCATCAGTTCTGCCACATCGGTGCCCACAGCTTTTCGGGC
|
|
| Amino Acid Sequence |
>3-hydroxyacyl-ACP dehydratase
MMDINEIREYLPHRYPFLLVDRVVDLDVENKRIRAYKNVSINEPFFNGHFPAHPIMPGVLIIEAMAQAAGILGFKMMDLKPADGTLYYFVGSDKLRFRQP VLPGDQLILEAKFLSCKRSIWKFECQATVDGKPVCSAEIICAERKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|