Pseudomonas sp. P818, P818_RS0117630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. P818 P818-scaffold21, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCCGAGCAGGCCACCCAGCGCGCCGCCCAGCCCGGAAGAGGCTCCACCAGCACCTTTCTGTTGCAGCATCTCCTGACCGGATTTGAGCAGTTGATCGA GCAAGCCACGGGTATTCATCGCGCATTCTCCTGAGGAAATCTCGCCGAGTGTAGGCCTCGGCCATTGGCCCGGCAGCCGCCTGAATGCTTCCAGATATTA CCGCCGGGGCCGCTTGACAGCCCCTGCGTGGCCAAGCACCATCGGCCGACGATTCACGCAACGGGCTGTTCTTCATGTACGCCACCTTCGACCACCAAGC ACTGCTCCCAGGTTCCATGACCTGCCAGTGCGCGTGCGTCGTCGTTGCCAAGAAATCCAAGAAACAGTCGCTCATTTGACCGGGGCGTGCTGTCCCGTCA GATGGGCTGACAGGACAAGCGCCAGGTTCAATCCCCTTCCCGCTCGTATCCCGCCCCCTTCCTGACGGCGACCAGACGGTCAGTCGCAAGGAGTTTTCGC
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| DNA Sequence for Gene |
>P818_RS0117630
ATGTCCGCTTTTCAGGGTATCTGGGTGGCGCTGGTCACCCCCTTTCGTAACGGCGAGATCGATTTCGCCAGCCTCAACCGCCTGACAGCCAGGCTGCTGG AGGACGGTGTCGCGGGTCTGGTGGTCTGCGGAACCACCGGCGAAGCCGCCGCACTGAGCCAGGCCGAGCAGTTGGCGGTGCTGGATGCGGTGCTCCAGCG CGTCCCCGCACAGCGTGTGATCATGGGCCTGGCCGGTAACCAGCTGAATGCGCTGCTCGACCTGCAACGGGAAATCCAGCGCCGCCCGTTAGCCGGCCTG CTGGTACCGGCGCCCTACTACATTCGCCCGTCGCAAGCGGGGCTGGAGCACTTCTTTAGCGCACTGGCAGACGCCGCCGAGGTACCGCTGGTGCTCTACG ACATCCCCTACCGCACAGGGGTGCGCATCGAGCGCGAGACGCTGCGCCGCATCGTCCGCCACCCCAATATCCAGGCCATCAAGGACTGCGCGGGCGATGC CGAAACCACCATGGCGCTGATCGCCGATGGCCAGGTACAGGTGCTGGCCGGCGAGGACGCACAAATCTTCAATACCCTGTGTCTGGGTGGCGCAGGCGCC ATCTCGGCCTCGGCGCATATTCGCACCGATCTTTACGTGGCCATGCAGCAGCGTGTGGCGCAAGGCGATCTGCAGGGTGCTCGGCAGTTGCACTATCGCC TGTTGCCCTGGATACAGGCGGCTTTCGCCGAAGCCAACCCTTCGGCGATCAAGGCGGCGCTGGCGATGCAGGGGCTGATCGATGATGACGCGCCGCGAGC ACCATTACTGCCCTGCACCGCCGAGACGCGTCAGCGCATGCAGGAGGTATTGGCCCATCTCGCGAGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGGGGCGATATGCGCCACCATCAACTGCACGCTCTCGTTGCCGCGAAACTCGTTGAGATCGAGCTTGTAGGCCACTTCGGCCCAGCGCAGCGTCGGGT TGGGCCAGACCTCGCGGTCGATGTTGAAGGCGATGCCGTCGAGCTGCACGCTGCCGCACTCGGTCTTGAGCACCAGCTTCAGGTGCCGCTCGCCGACGAT GCGCTGACCCACGATCTGGAACACGCCATGGAACAGCGGCTCGGGAAAATGCTGGCCCCAGGGCCCGGCGTTGCGCAGGGCGCGAGCCAGTTCCAGGTGG AATTCGGTGGCGTCGAGCTGGCCGTCGGACAGCAGGCGGCCGGTCAGGTCGTCTTCGCACAACTGACGGCGCACCTCGGCGTCGAAGGCGGCGGCGAAGG CGCCGAAGTTTTCCTGCGGCAACGACAAGCCGGCGGCCATGGCATGCCCGCCGAACTTGCTGATCAGCCCCGGATGGCGCGCCGCCACGGCGTCCAGCGC
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| Amino Acid Sequence |
>dihydrodipicolinate synthase
MSAFQGIWVALVTPFRNGEIDFASLNRLTARLLEDGVAGLVVCGTTGEAAALSQAEQLAVLDAVLQRVPAQRVIMGLAGNQLNALLDLQREIQRRPLAGL LVPAPYYIRPSQAGLEHFFSALADAAEVPLVLYDIPYRTGVRIERETLRRIVRHPNIQAIKDCAGDAETTMALIADGQVQVLAGEDAQIFNTLCLGGAGA ISASAHIRTDLYVAMQQRVAQGDLQGARQLHYRLLPWIQAAFAEANPSAIKAALAMQGLIDDDAPRAPLLPCTAETRQRMQEVLAHLAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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