Pseudomonas sp. P818, P818_RS0115080 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. P818 P818-scaffold17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGTGGCACTTCATGCTCGGCCTGACGGTGTTTGCACTGGTCTGGCTGCGCCTGCTGGCGCGCGTGATCGCCCCGACACCGCGGATCGAGCCGCCGCT GCCCGCCTGGCAGGCCATACCGGCGCAGCTGATGCATGCCGCCCTGTACGCCCTGATGATCGGCGCACCACTGGCCGGCTGGCTGGTTCTCAGCGCCGCC GGCAAACCCATCCCCTTCTTCGGCCTGGAACTGCCGGCGCTGATCGATGCGAACCGGGATCTGGCCGGCCGAATCAAGGAGCTGCACGAGCTGGCTGGCA CGACCGGTTACTGGCTGATCGGCCTGCATGCCCTCGCCGGGCTGTATCACCATTACGTGGTGCGCGATAACACCCTGATCCGCATGCTGCCGCGACGCAA TTGAGGTGACGGCGCCTCTGTTCAAGTGCCCAAACCGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCGGACAGGCGCCCATCGAGGTTAGCCCGC
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| DNA Sequence for Gene |
>P818_RS0115080
|rimO
ATGTCCACCGCCACACCGAAAGTCGGCTTCGTCAGCCTTGGTTGCCCAAAAGCGACGGTCGACTCCGAACGCATCCTGACCCAGCTGCGCATGGAAGGTT ACGAAATCGTACCGACCTATCAGGATGCCGACGTGGTGGTGGTCAATACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCGCTGGACGCCATCGGCGA GGCCATCGCCGAGAACGGCAAGGTGATCGTCACCGGCTGCATGGGTGTGGCCGAAGACAGCATCCGCGACGTGCACCCCAGCGTGCTGGCCGTCACCGGC CCGCAGCAGTACGAGCAGGTGGTCAGCGCGGTGCATGAAGTGGTCCCGCCGAAGACCGAGCACAACCCGCTGATCGACCTGGTGCCGCCGCAGGGCATCA AGCTCACGCCGCGTCACTACGCCTACCTGAAGATTTCCGAGGGCTGCAACCACAGCTGCAGCTTCTGCATCATTCCGTCGATGCGTGGCAAGCTGGTCAG CCGCCCGGTGGGCGATGTGCTCAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAGCTGCTGGTGATCAGCCAGGACACCAGCGCCTACGGCGTC GACATGAAGTACAAGCTGGACTTCTGGAACGGCCAGCCGGTGAAGACGCGCATGCTCGAGCTGTGCGAGGCGCTGTCGTCAATGGGCGTGTGGGTGCGCC TGCACTACGTCTACCCCTACCCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTGCTGCCGTACCTGGATATCCCGTTCCAGCACGCCAG CCCGAAAGTGCTCAAGTCGATGAAACGCCCGGCCTTCGAAGACAAGACCCTGGCACGCATCAAGAAGTGGCGCGAGATCTGCCCGGAGCTGACCATCCGC TCCACCTTCATCGTCGGCTTCCCCGGCGAGACCGAAGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAGGCCCAGCTCGACCGCGTCGGCTGCTTCC AGTACTCTCCGGTTGAAGGCGCGCCGGCCAACGACTTGGGCCTGGAGCCGGTACCGGATGACGTCAAGCAGGAACGCTGGGAGCGCTTCATGGCGCATCA GCAGGCGATCAGCTCGGCACGCCTGCAGGCCAAGATCGGCCTGGAAATGGACGTGCTGGTCGATGAAGTGGACGGCGAAGGTGCGGTGGCTCGCTCCTGG GCCGACGCCCCTGAGATCGACGGCAGCGTGTTCATCGACTCCACGGACGTCAAGCCGGGCGACAAGGTGCGCGTGCGCATCGTCGACGCCGATGAATACG ACATGTGGGGCGAGCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCACTCCTCTCCTGTTGAGCCCCGCAGCCTGCGGGGCTTTTTCTTTCCAGCCTCCTCAACGCCTTGCCGGTACAATGTCTTTCTTTTTATCGAGCGCCA CCATGAGCGAACCCACCCGCCTGTCCAAACGCGTCATCGAACTGTTCGGCTGTTCCCGACGCGAGGCTGACCTGTACATCACTGGTGGCTGGGTCACGGT GGACGGCCAGGTGGTCGAGGCGCCGCAGTTCAAGGTCGAGGAACAGCGTGTCGAGCTGCTGCCCGGCGCCAGCCTCGAGCCGGTAGAACCGGTTACCCTG CTGGTGCATTGCCCGGCCGGCAGCAGCGCCGCGCAATTGCAGCACCTGCTCGTGCGCGAGCGGCACTGGGAGGAAGATCCGCACGCCCAGCGCGTTCTGC ATGGCCATTTCCTGCGTCAGGAACAGAGCCTGCCACTGCAGAACGGCGCCAGCGGCCTGGTGGTGCTCAGCCAGGACTGGCGTGCACAGCGCAAGCTGCG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTATPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVAEDSIRDVHPSVLAVTG PQQYEQVVSAVHEVVPPKTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DMKYKLDFWNGQPVKTRMLELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKKWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLEPVPDDVKQERWERFMAHQQAISSARLQAKIGLEMDVLVDEVDGEGAVARSW ADAPEIDGSVFIDSTDVKPGDKVRVRIVDADEYDMWGELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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