Pseudomonas sp. P818, P818_RS0100475
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. P818 P818-scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGATCATCAGTGGTCTGTCGCTGGGCGTGCTGGTGGTCGAGGCCAGCCCTTCGAGTGGCTCGCTGATCACTGCGCGGCTGGCCGCGGAGCAGGGGCGCGA GGTCTATGCCATCCCTGGTTCCATCCATCATCCCGGAGCGCGCGGCTGTCATCAGCTGATTCGTGACGGCGCCACATTGGTGGAGAGCATCGAGCATATC CTCGAAGCCCTGCGCGGTTGGCAGACGCCAGGTGACCAGCAGGTTTCGGCTGCGCAGCCTGACGCCGAGCGGCATCCTCTGCTGACGCTGCTGCACGCCG CGCCACACAGTAGCGAGGCCTTGGCGCGTAGCAGCGGCTGGCCGCTGGCGCAGGTGCTGGCTGCATTGACCGAACTGGAGCTGGACGGTTTGGTCTGCTG CGAGGGTGGGCGCTGGCTGGCGCGTGGTTCATGAAGGGTAATGGCCGCAGTGGTCTGGCTTGGATAGACTGCCGCCCATTCCAATGGCGGGAGACGACCC
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| DNA Sequence for Gene |
>P818_RS0100475
ATGGCCAGCAACTGGCAGGTACAGCAAACGGCGCGTGTGGTGCGTGACGGCGGCGTGATCGCCTACCCCACCGAGGCGGTCTGGGGCCTGGGCTGCGATC CCTGGAACGAAGAGGCGGTGGACCGCCTGCTGGCCCTCAAGGAGCGGCCCGTGCACAAGGGCCTGATTCTGGTGGCCGACGATATCGAACAGTTCGACTT TCTCCTCGATGATCTGCCGGAGATCTGGCAGGAGCGCCTGGCTGGCAGCTGGCCTGGCCCGAATACCTGGCTGGTGCCGCACCAGGGGCTTTTGCCTGAG TGGGTCACCGGCGCGCACGACAGCGTGGCGTTACGTGTCAGTGCTCATCCGCTGGTGCAAGCGCTCTGTCGTCTGACCGGACCACTGATTTCAACCTCGG CCAATCCAGCCGGGCGCCCTGCTGCGCGTTCGCGTCTGCGCGTCGAGCAGTATTTTCCCGGCGAGCTGGACAAGGTGCTCGGCGGCGCGTTGGGCGGGCG CAGGAATCCCAGCCTGATTCGCGATTTGCGCACGGGCGATGTGATTCGCCCGTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACCGCGTCCTGTAGGAGCGAGCTCTGCTCGCGAAGCGTTTGCAGGGTCGGCTTCGCGAGCAGAGCTCGCTCCTACGCTTACGGCAGCAAGATGGTCGA GCCGGTGGTCTGCCTCGAGCTCAGCGCATCCTGGGCGGCGGCGGCGTCCTTCAGCGCGTAGCGGTTGCTGATTTCCACCTGCAGCTGGCCGCTGGCGATC ATGCCGAACAGCTCATCGGCCATGGCCTGCAGGCGTTGCGCGCTGGTAGCGTAGCCGGCCAGGGTTGGGCGGGTGACGTACAGTGAGCCCTTCTGCGCGA GGATGCCCAGGTTGACGCCGGTCACCGCACCCGAAGCATTGCCGAAACTCACCAGCAGGCCGCGTGGTGCCACGCAGTCCAGCGAGGTTTCCCAGGTGTC CTTGCCGACGCCATCGTAGACCACCGGGCACTTGGCTCCGTCGGTCAGCTCCAGCACGCGCTGCACCACGTTCTCGTGGCTGTAGTCGATGGTCGCCCAG
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| Amino Acid Sequence |
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MASNWQVQQTARVVRDGGVIAYPTEAVWGLGCDPWNEEAVDRLLALKERPVHKGLILVADDIEQFDFLLDDLPEIWQERLAGSWPGPNTWLVPHQGLLPE WVTGAHDSVALRVSAHPLVQALCRLTGPLISTSANPAGRPAARSRLRVEQYFPGELDKVLGGALGGRRNPSLIRDLRTGDVIRPS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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