Pseudomonas sp. P818, P818_RS0100265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. P818 P818-scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCGCTCGGGACGCCCCAGCGCATCGCGCTCGAGCTGGAGAAAGTCGCTGTCGTATTCCAGATCTTCACCACAGGGCGAAGTATCCGAAACGGCGGCGA GCAACAGCGAAGTCTCCACGGATTCGATCTCCTTATCGATTTGAACTGCGTCACATAAATGCCATAACTTCATCCTGGATGGCACTTCGCCAATTAACGA TCGATGTTAATTGGCCACTACGCAATGTCGATTGTGTCGCGCATTTTTTAACTTAAAAATATACAAAGTCAAGGTACTATGGCGACCGCCCAAGGCCTTT GTGAACTTGGGCAAAGTTTCGCCAAGTTGCGAGCTTGAACACGTACTGGAATCTGGGAACAATAGGTAAGATCGCGTGCTTCCGCGCTGCAGAGCACCGT TGACGGACGTTTCACCAGGGCTCACATCGGCCTGAAAGCCTCATGAATAAAGGCTTTCACGGCTTTCAAGGTGTTACCAGGAGCCGGGCAGGGAGGCCAC
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| DNA Sequence for Gene |
>P818_RS0100265
ATGGCGCTGCGCTTGACCATCACCAGCTATCACAAGATCACCCCCGGCCAATGTCCCGAGAAAACCTTGGAATATGGCGTGATGGCAATTGGCCGCGGCC CGGATAATGACTGGGTATTACCTGACCCGGCGCGCCTGGTTTCCTCGAAACATTGCCTTGTGCAAAACAAGGATGGTCGCTACTACATCACCGACAACAG CACCAACGGCGTCGAGCTGGTCAAGGCCGGTATTCGCATGCAACGCGGCAACAGCGAACTTCTGCAGCACGGCGAAGTTATTCGAATCGGTGAATACGAA ATTGAAGTGACGCTGGAAAGTTCCATTGCAGAAGGCTCCGCGCCGTTTTCCAGTGCCGCGTCCGCAAACAGTTTCGAAGCCCTGATGGCCAACCAACAGG TCGCTCCGAGCAGCCCTTTCGATGCACCGGCCAACCCCTTCGATGCCTCGGCCAGCGCCCACCTGCAACGCGTCGCTCCGCACGAGACGCTGCCCGATCT GTTCGATTTTCTTGGCCCGAGCACAGCCGCCGCACCGGCCCCCGTTGCCGACCATGTGCCAGCGCAGCAGCATGATTTCCGACCGCCGGAATTCAAGGCG CCTGCCGCTCCCATCGAACCCCAACCCACCCCAAGTGCTCCGGGACTGATCCCGGATGACTGGAACCTGTTCGATGACATCGCGCCGGCAGCCGCCCCAG CTGCCCCCTTGCCGGAACATGCCCCGCGACCGGAACCAACCCCGCCGGTAACGAGCCCCACACCTGCACCCGTCGCGGCGCCGGTCACTCAGGCTCCAGC CACCCAGCCGCAGACTGCACAGCCGGACGATGCACTGCTACAGGCCTTCCTGCGCGGTGCCGGGCTGGATCAGCTGCGTCTGGATGGCCAGCAGGCCGCC GCGCAGATGGAAAGCATCGGACGCAGCTACCGCCTGATGGTCGAGGGCCTGATCGATGTACTGCGGGCGCGCAGCAGCCTCAAGGGCGAGTTCCGCCTGC AGCAGACCATGGTTCAGCCGGTGGAAAACAACCCGCTGAAGTTCGCGCCCAACGCCGAAGAAGCCCTGCTGCTGTTGCTGCGTGGCGGCAACTCGGCATT CATGCCGGCCGACCAGGCCGTACAGGACGGTTTCGAGGACCTGCGCGCCCATCAACTGGCCGTCATGGCCGGTGTACAGGCCGCCATCCGTCACCTGCTG GCGCGTTTCGAACCGCAGACACTGGAAGCACGCATGGGCAAGGGAGGCGGGCTGGCCAGCCTGCTGCCGGGCTCGCGCCAGGCGCAGTGCTGGCAGCAGT TCGTGGAGCTCTACGCGACCTTGTCGCGCGAAGCCGAAGACGATTTTCAGGACCTGTTCGGCCGCGAGTTCGGCCGGGCCTATGAGCAACATATCGCCCG TCAACGACGCCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGCCCGGGCAAGGATGACAACGTGCGACAACGACTACTTCGGCCCGCTCTGCTGGGCCTGGTGCTGGCAGGGCTTGGCAGCGGCTGCAGCAAGGACGC GATGGACGACAGCGCTGCCGCACAAGGGCCAACCAGCGTCGTGCTGCAACTGCAGGCCGGCGACGAACTGAACCCTACCGTCGAAGGCTACAGCGCCCCG GTGCGTGTGCGCCTGCTGGAGCTGCGCAGCGCCGCCGCATTCAGCCGGACCGATTACTTCAGCCTCGCCGAGCGCGCGGCAGCGACCCTGGGCGGCGAGC TGGTGGCTGAGGACGAATGGCTGGTCCATCCCGGTCAGACCCGGGAACTGAAACGCACGCTCGACCCGGAAACACGTCATCTCGGCCTGCTGGTCGGCTA CCGCGAAATTGACCGGGCGCAGTGGCGCGTGGTCCTGGAGCCAGAGCAGGGCATCCGCAGCCATTACCGCATCGACCTCGGGACCCACGCCGCCAGCGCC
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| Amino Acid Sequence |
>type VI secretion protein
MALRLTITSYHKITPGQCPEKTLEYGVMAIGRGPDNDWVLPDPARLVSSKHCLVQNKDGRYYITDNSTNGVELVKAGIRMQRGNSELLQHGEVIRIGEYE IEVTLESSIAEGSAPFSSAASANSFEALMANQQVAPSSPFDAPANPFDASASAHLQRVAPHETLPDLFDFLGPSTAAAPAPVADHVPAQQHDFRPPEFKA PAAPIEPQPTPSAPGLIPDDWNLFDDIAPAAAPAAPLPEHAPRPEPTPPVTSPTPAPVAAPVTQAPATQPQTAQPDDALLQAFLRGAGLDQLRLDGQQAA AQMESIGRSYRLMVEGLIDVLRARSSLKGEFRLQQTMVQPVENNPLKFAPNAEEALLLLLRGGNSAFMPADQAVQDGFEDLRAHQLAVMAGVQAAIRHLL ARFEPQTLEARMGKGGGLASLLPGSRQAQCWQQFVELYATLSREAEDDFQDLFGREFGRAYEQHIARQRRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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