Pseudomonas syringae BRIP39023, A988_22869 (flhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCTGGTGGCGCTGAAAATTCGCGAAATCGGCGCGCATAACGAGATCCTGATTCTGGAATCTGCGGCACTGGCGCGTTCCATTTACTACAGCACCGAGCT CGATCAGGAAATTCCCGCCGGCCTGTATCTGGCCGTCGCCCAGGTGCTGGCCTACGTCTATCAGATCCGCCAGTTCCGCGCCGGCCAGGGCAAGCGCCCC GACCCTCTGGGCGACATCAAAATCCCTCCCGACCTGCAGCGCGACGCGTAGTCCGGTCCCCTCTCGCGACGTTCGGGCATCAATCTGAAAGGCCCAGGTT TCAGACGCTCCGCGTCCGCTCTTGCACAGGCAAACGAGAAGATTTTTCTGACTGCGCTCAGCGCACTGGATTTACGTGACTTCTGTGTCTAAAGCCTTAC TGCCACTGGCTTTGTAAAAGTTGGACAGCTTTTTGCAACAGGGTCGATACAGGGCGCCATCGGCGTCAATGTTTTGATCTAGTGCGCAGGTAACGAATCA
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| DNA Sequence for Gene |
>A988_22869
|flhA
GTGGATCGCTCTCAATTACTCAGTAGCGCACGCAGCAATATCACAGGCCTGGGCCGTGGTCAGTTGGGCGTTCCGTTGTTGTTGCTGGTCATGATGGCAA TGATGATGTTGCCTATGCCGCCATTCCTGCTGGACGTGTTCTTCACGTTCAACATCGCACTCTCCATCGTCGTGCTGCTGGTGTGTGTGTACGCCCTGCG GCCGCTGGACTTCTCGGTATTTCCGACCATTCTGCTTGTCGCCACGTTGCTGCGTCTGGCGCTGAACGTCGCTTCCACTCGGGTGGTCATGCTTCACGGG CAGGACGGCCACGCCGCTGCGGGCAAGGTGATTCAGGCCTTCGGTGAAGTGGTGATCGGTGGTAACTATGTCGTTGGTATCGTGGTGTTCGCGATTCTGA TGATCATCAACTTCGTGGTAATCACCAAGGGTGCCGGCCGTATTTCCGAGGTGAGCGCGCGCTTCACCCTCGACGCGATGCCCGGCAAACAGATGGCGAT CGACGCCGACCTCAACGCCGGCCTCATCGATCAGCCCGAAGCCAAGCGCCGCCGTGCCGAAGTTGCCCAGGAAGCCGAGTTCTACGGTTCCATGGACGGT GCCAGTAAATTCGTGCGCGGCGATGCGATTGCCGGTCTGCTGATTCTGTTCATCAACCTGATTGGCGGCATGCTGGTCGGTATCCTGCAACACAACATGA CCTTCGCCGACGCAGGCCGCGTTTACACCCTGCTGACCATCGGTGACGGTTTGGTGGCGCAATTGCCATCACTGCTGCTGTCCACCGCCGCCGCGATCAT GGTGACCCGTGCTTCCGGTTCGGAAGAGATGGGCAAGCTCATCAATCGTCAGATGTTCGCTTCGCCCAAGGCGCTGGCGGTTTCCGCTGCGGTCATGATC GTGATGGGGCTGGTGCCGGGCATGCCGCACTTCTCCTTCATCAGCCTCGGCCTGGTGGCTGCAGGCGGCGCGTATCTGCTCTGGAAGAAAGAAAATCAGG TGAAAGTCGAGGCGCTGGCCGAAGTGCAGCGTCAACAGGACCTGCTGCCTTCGCCGACCCGCGTTCAGGACGCCAAGGAACTGGGTTGGGATGACGTGAC GCCCATCGATATCATCGGCCTGGAAGTGGGTTACCGCCTGATTCCGCTGGTGGATCGCAACCAGGGCGGTCAGCTGCTGGCGCGTATCAAGGGCGTGCGC AAGAAGCTCTCGCAAGAGCTCGGCTTCCTGATGCCCACCGTGCACATTCGCGACAACCTCGATCTGGCGCCCAGTGCCTATCGTCTGACGCTGATGGGCG TGATTCTGGCCGAGGCCGAGATCTACCCGGATCGCGAACTGGCGATCAACCCCGGTCAAGTGTTCGGCACCCTGAACGGCATTACCGCCAGAGACCCGGC GTTTGGTCTGGAAGCCGTGTGGATCGAAATCAGCCAGCGCAGTCAGGCGCAGTCGCTGGGGTACACCGTCGTCGATGCCAGTACTGTAGTGGCAACCCAC TTGAACCAGATTCTCTACAAGCATTCGCATGAGCTGATCGGCCACGAGGAAGTCCAGCAATTGATGCAGTTGCTGGCCAAAAGCTCGCCCAAGCTGGCTG AAGAGCTGGTGCCTGGCGTGCTGTCGCTGTCTTCGCTGCTCAATGTGCTGCAGGCGCTGCTGGCTGAACACGTACCTGTGCGGGACATTCGCAGCATTGC AGAGGCTATCGCCAACAACGCCGGGAAGAGTCAAGATACCGCCGCTTTGGTGGCCGCAGTGCGAGTGGGTCTGAGCCGCGCAATCGTCCAAAGCATTGTA GGCGTTGAGCCGGAGCTGCCTGTTATCACTCTGGAACCAAGGTTGGAACAGATATTGCTCAATAGTTTGCAGAAGGCTGGTCAGGGTCAGGAAGAAGGCG TTCTTCTTGAGCCAAGCATGGCTGAGAAGCTCCAGCGTTCGTTGATTGAGGCCGCCCAGCGTCAGGAGATGCAAGGGTTGCCGGTAATTCTTCTGGTAGC AGGGCCTGTCCGGGCGATGCTGTCACGATTTGGACGATTGGCTGTACCGAACATGCATGTTCTGGCGTATCAGGAAATTCCGGACAACAAGCAAGTAACC ATCGTAGCGACTGTCGGGCCAAACGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGAGTCATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAAGCCATGAAGCTGGTTCGCGATGAGCTGGGCGCTGAAGCGGCCATCATCGG TAACCGGCGCATTGCTGGTGGCGTAGAGCTGACTGCTGCTCTGGATTACAAGCTGTCCGCCCTGGCACCGCGTGTGCCGAACATGGAGCTGGAAGACGAG CTGCGCAAGACTCAGTCGCGCATCGTCTCCGCCCAGGCCGAATTGAACAACCGCAGCGACAGCGACGCATCGGTCAACCTGCAGCTGTTTTCCGGCAAGC CGGTCAACCCTGCCGATACGCACATCGAACCGACGCTCGAAGAGCCGCCGCGCCCATTCGCGTACGCACCGCCACAGGCCGCCGAGCCTGCCGTTGGCCA GCGCGCCTATGACTCGATGCGCTCCGAATTGAACGGCCTGCGCGAGCTGCTGGAAGTCCAGCTCGGCTCGCTGGCCTGGAACCAGTTGCAGGGCAGTCGT
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRSQLLSSARSNITGLGRGQLGVPLLLLVMMAMMMLPMPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFSVFPTILLVATLLRLALNVASTRVVMLHG QDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVITKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPEAKRRRAEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMLVGILQHNMTFADAGRVYTLLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEEMGKLINRQMFASPKALAVSAAVMI VMGLVPGMPHFSFISLGLVAAGGAYLLWKKENQVKVEALAEVQRQQDLLPSPTRVQDAKELGWDDVTPIDIIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQELGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITARDPAFGLEAVWIEISQRSQAQSLGYTVVDASTVVATH LNQILYKHSHELIGHEEVQQLMQLLAKSSPKLAEELVPGVLSLSSLLNVLQALLAEHVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLSRAIVQSIV GVEPELPVITLEPRLEQILLNSLQKAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGLPVILLVAGPVRAMLSRFGRLAVPNMHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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