Pseudomonas syringae BRIP39023, A988_22639
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAAGAAATCTCGGTCGGTGTCATTGACGCCGAGGTTCAGCACAAGGCTGTCTCTATGCGCGTGCTGACGGTCGATGACTCGTCGGTGGCCCGCAAGCA AGTGAGCCGCTGCCTGGAAACCGTCGGGGTGGAGGTCGTCGCGCTCAACGATGGTCGTCAGGCGCTGGACTACCTGCTCAATATGGTCGCAGAAGGCAAA AAGCCTGAAGAAGAGTTCCTGATGATGATCTCCGACATTGAAATGCCGGAGATGGATGGCTATACCCTTACCGCAGCAATACGTAATGATCCACGCATGC AGAAGATGCACATCACCTTGCATACCTCGTTGTCAGGGGTATTCAACCAGGCGATGGTCAAGAAAGTCGGCGCGGATGACTTTCTCGCGAAATTCCGGCC TGATGATCTGGCGGCCAGGGTCGTTGCGCGGATCAATGCAGCAGAATAACCAGCCGGGGGCGTCGTCCCCGGTGATTCACATGATTTGAGAGGCGGCACT
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| DNA Sequence for Gene |
>A988_22639
TTGTCTACGGGTAATTTGGATTTTGATCAGTTCCGGGTATTTCTGGAAAAAGCCTGTGGCATTCTGCTTGGGGAAAACAAGCAGTACCTGGTGTCCAGCC GCCTCAACAAATTGATGGAGCAGCAAAGCATCAAGTCGCTTGGCGAGTTGGTCCAGCGTATTCAGACCCAGCCGCGCAGTGGTTTGCGCGAGCAGGTCGT CGATGCGATGACCACCAACGAAACCCTGTGGTTTCGCGACACCTATCCGTTCGAAGTGCTGAAGAACAAGGTGCTGCCCGAGCAGATCAAGGCCAGCCCT GGTCAGCGACTGCGCATCTGGTCGGCCGCCTGTTCGTCGGGTCAGGAACCGTATTCGCTGTCGATGTCCATCGACGAGTTCGAGCGTGCCAATCAGGGTC AACTCAAATCGGGCGTGCAGATCGTCGCAACCGATCTGTCGGGCTTGATGCTCAATAACTGCAAGACCGGCGAATACGACAGTCTGGCTATCGGCCGCGG CCTGTCGCCGGATCGTCTGCAGCGCTTTTTTGACGTTAAAAGCCCGGGCCGCTGGGTGGTCAAGGCGCCGATCAAGAGTCGTGTGGAGTTCCGCTCGTTC AACCTGCTCGACAGCTACGCCTCGCTGGGCAAATTCGACATCGTGTTCTGCCGTAACGTATTGATCTACTTCTCCGCTGAAGTGAAGAAAGACATCCTGC TGCGTATCCACGGTACGCTCAAGCCAGGCGGTTACCTGTTTCTGGGGGCTTCCGAAGCACTCAATGGTTTGCCGGATCACTACCAGATGGTTCAGTGCAG CCCCGGGATCATCTATAAGGCCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGTCTGTCAGTTGCCTGAGATGAAAAAAGAGACCTTCGGGTCTCTTTTTTTGTGCGCGGCTGAAAACAGCTTTGATCGTCTGCCCACCGGTTCATGTTT GCGTACTGTTGCTCACCAGTTTTGCAAAAGCGTTGGCGGCGGCGCTCTGGTAGCCGTTTTTACGCCGCAGCAGCGCAACCGTCCGCCCGGGCAAGGCAGG GATCGTCTGAACTTCGCACAACCCAGGCTGCTCGCGAACGATGGCATCGGGAAGAATGGTCGCCATGCGGCCCTGGGCAACGACCTTGAGCAAAATGGCA ATCGAGTTCGCCTCGAGGCCGACCGTCGGCTTGAAGTTCTGCGTATGGCACCAGGCATCCAGCAATTGGCGAGTGGCGAATCCGGGGGCGAGCAAGGCAA AGCGAAGCGTTTGCAGGTCCTCAAGTGTCAGCACGGTCTGTTTTTCGGGGGCAGACTTGGCCATGACCAGGCACAGTTGTTCATCGAACAGAGGCTGGCT
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| Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFDQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQSIKSLGELVQRIQTQPRSGLREQVVDAMTTNETLWFRDTYPFEVLKNKVLPEQIKASP GQRLRIWSAACSSGQEPYSLSMSIDEFERANQGQLKSGVQIVATDLSGLMLNNCKTGEYDSLAIGRGLSPDRLQRFFDVKSPGRWVVKAPIKSRVEFRSF NLLDSYASLGKFDIVFCRNVLIYFSAEVKKDILLRIHGTLKPGGYLFLGASEALNGLPDHYQMVQCSPGIIYKAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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