Pseudomonas syringae BRIP39023, A988_20141
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAGATGGCGCCATTTCGCCGAACTGATTGCCACACTGGTCAATGCCTGAAAAACCTCGAACCTCACTCGGTTCGGGGTTTTTCAGCTTTTGGCGTGTGC TTCAGTCGCGATAGAACACCTGCACCAGGTGATAGCCGAATTTGCTCTTGATCGGCCCATGCACGACGCGTAGCGGCTTTTTGAAGATCACCTGATCGAT CGCACCGACCATTTGCCCAGGCCTGACTTCACCCAGATCGCCGCCACGTTTGCCGGACGGGCAGCTAGAATGCTTTTTAGCCAGCACGTCAAACGCCTCA CCCTTGGCAATGCGCAGCTTGAGCTGTTCGGCCTCTTCGGCGGTCTTCACCAGAATATGGCGGGCTTGGGCTTTCATGTCGCAATATCACCTGCTGCAAA AGGCTGCCATTATGCCTGCTCTTGCTGAGCGACGCCCGCGCGTCACGCGTGCCGTCCTGACGGCCGTGGTCTTTTTACTTCATTTTGTACGGTATTGATT
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| DNA Sequence for Gene |
>A988_20141
ATGGATTTCCCGGCGCTGTTGAAGATTCTGGCCAGTCAGGACGGATCGGACCTTTACCTTTCCACCGGAGCGCCACCGTGCGCCAAGTTCAATGGTGTGC TCAAGCCACTGGGCAGCGAAACCTTCAAGCCGGGAGAGGTGGCGGTGATTGCCCAGGGGCTGATGGACGAGGAGCAGAAGCTCGAGTTTCAGCGCGAACT GGAGATGAACCTCGCCGTTTCGATGGCCGGCATCGGCCGGTTCCGGATCAATATCTTCATGCAGCGTAACGAAGTGTCCATCGTCGCGCGGAATATCAAG CTGGACATCCCGCGTTTCGAAGACCTGTTTCTGCCGCCCGTACTGCTCGACGTGATCATGGAAAAGCGCGGTCTGGTGCTGTTTGTCGGGGCCACCGGTT CGGGCAAGTCGACCTCGTTGGCGGCGCTGATCGACTACCGCAACCGCAACGCCAGCGGCCATATCATCACCATCGAAGACCCGGTCGAGTTTATCCATCG CCACAAGAAGTCGATCGTCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTCCATGCGGCACTGAAGAACACGCTGCGCCAGGCGCCGGATGTGATT CTGATCGGCGAGATTCGCGATCGCGAGACCATGGAGCACGCGCTGGCGTTTGCCGACACCGGCCACCTGGCGATCTCGACACTGCACGCCAACAACGCCA ATCAGGCGCTGGACCGGATCATCAATTTCTTCCCGGAAGAGCGTCGCGCGCAGTTGCTGCATGACCTGGGCAACAACCTCAAGGCGTTCGTCTCGCAGCG ACTGGTCAGAACCCCGGATGGCAAGCGTCGTGCGGCGGTGGAAGTGATGATGGGCACGCCGACCATTCGCGACCTGATCCAGCGCAATGAACTGACCGAG CTCAAGGGCATCATGGAGAAGTCCGGCAGCCTCGGTATGCAGACGTTCGACTCGGCGCTATTCAATCTGGCCGTCGAAGGTGCGATCAGCGAAGAAGAGG CCCTCAAGAACGCCGATTCACAAAACAACGTGCGCCTGCGCCTCAAGCTGCACAGTGAAGGCGGCGCCGGAACACTGACCACACCGCCACCGGCTCCGAC CGGCAGCAGCACGGCAAGCACCGCCGAGTGGGGGCTGGTCGATGATGACGAGCCGGGTCCGCAAGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCGGAGACGCTCCTAAACCTTCCGGGCAGAAGCTTCGTTGTGGGTCAGATCATTCAGGATGCGCGGCCGCCAGCAATTCCTGTGTGTACGGGTGCTGCG GCGCATCGAAAACGTCATGGCTGGCGCCGCGCTCGACGACTTTGCCATCCTTGACCACGATCACGTCGTGGGCAAGGGCTTTGACTACCGCCAGGTCATG GCTGATGAACAGGTACGTCAGGCCGTGCTTTTCCTGAAGTTCGCGCAACAGCGCAACGACCTGTTTCTGCACGGTCCGGTCCAGCGCCGAGGTCGGCTCA TCGAGCAGAATCAATGCGGGTTTCAGCACCAGCGCTCGGGCAATGGCGATACGCTGACGCTGGCCACCGGAAAACTCATGGGGGTAGCGATGCCGGCTCT GCGGGTCGATGCCGACTTCTTCCAGTGCCCGAATGACCTCGGCATCGCATTTCGCCGGGTCGTACTGGCTGTGTACCTCCAGTCCTTCACTGATGATCTG
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| Amino Acid Sequence |
>pilus retraction protein PilT
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGSETFKPGEVAVIAQGLMDEEQKLEFQRELEMNLAVSMAGIGRFRINIFMQRNEVSIVARNIK LDIPRFEDLFLPPVLLDVIMEKRGLVLFVGATGSGKSTSLAALIDYRNRNASGHIITIEDPVEFIHRHKKSIVNQREVGVDTRSFHAALKNTLRQAPDVI LIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRIINFFPEERRAQLLHDLGNNLKAFVSQRLVRTPDGKRRAAVEVMMGTPTIRDLIQRNELTE LKGIMEKSGSLGMQTFDSALFNLAVEGAISEEEALKNADSQNNVRLRLKLHSEGGAGTLTTPPPAPTGSSTASTAEWGLVDDDEPGPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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