Pseudomonas syringae BRIP39023, A988_19631
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCGACAACATCATCCTGACCCCGACCAAGGTCCGTGGCTTGAAGAGCAGTGAAGCGCGCGCCCGCGCCATGGAGTTGCTGGATCGGGTGGGGCTGGCA CACAAGGCCGGTGCCTACCCCGCACAGTTGTCCGGTGGCCAGCAGCAGCGTGTGGCGATTGCTCGCGCGCTGGCGATGGAGCCGCCCGTCATGCTGTTTG ACGAGCCCACCAGCGCTCTTGACCCGGAAATGGTCGGCGAGGTGCTCGGCGTCATGAAAGGCCTGGCCAAAGAGGGCATGACCATGATGTGCGTCACCCA CGAGATGAATTTTGCCCGGGAAGTGGCCGACACCATCTGGTTCATGGATGCGGGGCAGATCCTCGAAAAATCCCGCCCTGAGGTGTTCTTTCAGCAACCG ACCCATCCGCGTGCCCAGCGCTTCATTGCCGACCTGCGCAGCCATTGAGCGCAGGCACTGATTTCAGCGAATCACTCAATTCATTTTCAGGAGTCTCACC
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| DNA Sequence for Gene |
>A988_19631
ATGCGTATCAAGTCTGTACTGGCTGCACTGGCGTTGTCGCCGCTGGCTGTTTCGGTGGTCCATGCTGATCAGCTCAGCGATGTGATGAGCAAGAAAAGCC TGAGCTGTGGCGTGTATGCCGACGTTCCGCCGTTCTCGGCACCGGACCCTCAAACCCGCGAACTGGTGGGCATGGACGTCGATCTTTGCAAAGCCCTGGC CAAACACATGGGCGTGGAGCTGGAACTCAAGCCACTGTCGGTCGAAGCACGTATCCCGGAAGTCAAAATGGGCCGCGTGGATGTGATTTTCGCCAACCTG GCTTACACCAAGAGCCGTGCCGACCAGATCCAGTTCAGCGACCCTTACTACATCGCCAAGGAAACACTGGTAGTCCGTGCCGCGAATGCCGATCAACCGA AATCGTTCTTCAAGGGCAAACGCATCAGTTCGACCAAAGGCTCTACCTCCGAGCAGTCGATCCGTCTGGCTGACGCGACGCCAGTGACCTTCCAGGACAC CGGCTCTGCCTACATGGCACTGCAACAGAACAAGGTGGTGGGTCTGGTGACCAACACCATGACCGCAATCAAGCTGGTAGGGCAGGCCAAGGCCGGCGGC GTGGAATTGGTCATTGCCAAGGAACCGATGGCGCTTGAGCCCATTGGTGCCGGCATGCGCCAGGGCGAACCGGCCTTTCTGGCGAAGGTCAACGAATCGC TGCGCGCAATGGAAGCCGCAGGTGAGATCGACGCGATCTGGGCGCACTGGATTGGCCCGAATACCGAATACAAGATGGTTCGCGAAGACAAGGTACAAAG CCTCAGCGAATTGAAATTCGACCCGTTGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGGGCATGAAGCCGACCAAACGGTCGGCTTCATGCCGCAACGGCGCCATCGCATCTTGATCAGATCTTGATATTTCCTTGATGGTTTATTAATAGCC GAGGTTCAGAGTCCGACCGACAGTATCAATCGTCGGCATGACCCCGCGTGGGCGTCTCAGAGGACAAAATGTCTGATCGCTCAGGTTCGGTTTCTCCATC GGCAGTCGCTGCTTTCATCACCCGAAAGAGACGTTTCGGCGTATCCCCTGTATGGCTGGTTCCGCTGCTCGCTGCCTTGATAGGCCTGTCGCTGCTGATC AGCAGCACACTGTCGAAAGGCTCGAGAATCTTCGTCACCTTCCAGAGCGCCGAGGGGCTTGAACCTCACAAGACGAGGGTCAAGGTCAGGAATGTGGTGA TTGGCGAGGTATCGGCCGTGGCCTTGAACAAGGACCGTACAGGCGTTGTGGCGACGGTGGACCTCGATGCCAGCGCCCGTGCTTTCACTGCCGAGGACTC
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| Amino Acid Sequence |
>glutamine ABC transporter substrate-binding protein
MRIKSVLAALALSPLAVSVVHADQLSDVMSKKSLSCGVYADVPPFSAPDPQTRELVGMDVDLCKALAKHMGVELELKPLSVEARIPEVKMGRVDVIFANL AYTKSRADQIQFSDPYYIAKETLVVRAANADQPKSFFKGKRISSTKGSTSEQSIRLADATPVTFQDTGSAYMALQQNKVVGLVTNTMTAIKLVGQAKAGG VELVIAKEPMALEPIGAGMRQGEPAFLAKVNESLRAMEAAGEIDAIWAHWIGPNTEYKMVREDKVQSLSELKFDPLP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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