Pseudomonas syringae BRIP39023, A988_17127 (mtnA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGATGCCGCCCTTGAGCTGCTCGGCGATGGCCAGGTCTGTGCCGTCACGCACGAAGTCTTCATCGACCCACTTGCCTTCGGCGGGCCAGATGTGGTCCT GCAGCCAGGTCATCAGTGGCAGGTCGTCGGCCAGCCCGCGAAACAGCGTCATCGCCGCATGGCCGTGGGCGTTGATCAGGCCGGGGCTGAGCAGCATGCC GGGCAGTTCCTGCACCTGCACGGCGTTTTGCCGCAGCGCTTCGGCGCGTGGACCGATATAGACGATACAGCCATCGCGGATGCCGATGCCGTGGTCCTTG AGCACGACGCCTGCGGGCTCGACCGGCACCAGCCAGGCGGGCAGGAGCAAAAGGTCGAGCGGTGCTGTAGCGTTCGGCATGAGAAGGTTTCCATCGTTTA TTACGTTGATGACGAAGTATACCCGAGCGTCTTCGCAGGCGGCTCGCTATAATCAGCGGCTTTTGATGCTGGGTTTCGGATGTTCAAGATGGAGTTGGCG
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| DNA Sequence for Gene |
>A988_17127
|mtnA
ATGCGCGATCGACTGTTGGCTGCGGAGAAGGTTAAGGCCATCGATTGGCGGGACGACGCTCTGTACCTGCTGGACCAGCGGGTACTGCCGTTCGAGGAAG TCTGGCACCGCTATACCACCGCCGAGGGAGTCGCCGAAGCGATTCGCACGATGGTCGTGCGCGGGGCGCCAGCTATCGGCATCAGTGCCGCCTATGGTGC GGTGCTGGGCGCACGTGCGCGTATTGCGCAAGGTGGAGACTGGTATCCGGCGCTGGAAGAGGACATGCAGTTGCTGGCCGATTCGCGCCCGACTGCAGTG AACCTGTTCTGGGCGCTGAACCGGATGCGTGATCGTCTGATGCGCGTGAAGGACGGCGATGACCCGCTGGCGGCCCTCGAGGCCGAAGCCGTGGCGATTC ACCTGAGCGACCGCGAGGCCAATCTGACCATGGCGCAGCTGGGCGCCGACCTGATCCGCAAGCACCAGGGCAATCTGCAGACGGTGCTCACCCACTGCAA TACCGGCGCGCTGGCCACGGGCGGCTTCGGCACGGCGCTGGGCGTGATTCGTGCGGCGCATCTGGAAGGCATGATCGAACGGGTCTACGCCGACGAAACC CGGCCCTGGCTGCAGGGCTCGCGGCTTACCGCATGGGAGCTGGCCAACGAGGGCATCCCGGTGACGCTGAACGCAGATTCCGCCGCCGCGCACCTGATGC GCACCAAGGGCATCACCTGGGTCATCGTCGGCGCCGACCGCATCACGGCCAACGGCGACGTGGCGAACAAGATCGGCACCTATCAGCTCGCCGTTGCCGC CATGCATCACGGGGTGCGCTTCATGGTGGTCGCGCCGAGTTCGACCATCGACATGGAAATGGCCAGTGGCGACGACATCATCATTGAAGAGCGCGACGGC CGCGAATTGCTCGAAGTGGGCGGCCAGCGGGTCGGCGCCGAGGTCGAGGCTTTCAACCCGGTATTCGATGTGACGCCGGCAGACCTGATCGACGCCATCG TGACCGAAAAGGGCATTGTCGAGCGTCCCGATACCGCGCGCATGGCTCAATTGATGAGCCGTAAACACCTTCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCGACAGGCCCGACCCGTCGCCGCTGTGCAATGCGGCTGGACGGGCCTGTAAGCGTTTCTCAGGCGTGTTATGCGTGTGCGGCTCGCTTTCAGCGCCT GCAAAGGATGTGAGCGCCTCCGCGATTGTGGTAATATCCGGCGGTTATCGGGGACACTGATTGTGGTCGCCCATGCTGCGTAGATTCATGGCATAACTCG TTGATTTGTCGTAAGTCGCTGCCCTGCACATGCTGGCAGCGGCGAGCTTCGTATACCCCGAATGGGTTTGCGAGGTTTCACCAGAAAAAGGAATCAGGCT TCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAGCAGTCCTACCTCGACTACGCAATGAGCGTAATCGTCGGTCGC GCACTGCCCGATGCACGCGATGGCTTGAAGCCCGTGCACCGGCGCGTGTTGTTCGCAATGAGCGAGCTGGGTAACGACTGGAACAAGCCGTACAAGAAAT
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| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRDRLLAAEKVKAIDWRDDALYLLDQRVLPFEEVWHRYTTAEGVAEAIRTMVVRGAPAIGISAAYGAVLGARARIAQGGDWYPALEEDMQLLADSRPTAV NLFWALNRMRDRLMRVKDGDDPLAALEAEAVAIHLSDREANLTMAQLGADLIRKHQGNLQTVLTHCNTGALATGGFGTALGVIRAAHLEGMIERVYADET RPWLQGSRLTAWELANEGIPVTLNADSAAAHLMRTKGITWVIVGADRITANGDVANKIGTYQLAVAAMHHGVRFMVVAPSSTIDMEMASGDDIIIEERDG RELLEVGGQRVGAEVEAFNPVFDVTPADLIDAIVTEKGIVERPDTARMAQLMSRKHLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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