Pseudomonas syringae BRIP39023, A988_15638

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae BRIP39023 genomic scaffold scaffold11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGTGCTGGGTATCCTCTATGAGAGCTACATTCATCCGCTGACGATCCTCTCGACGCTCCCGTCCGCAGGCGTTGGCGCATTGCTGACGATCTATGTGC TGGGCAGCGAATTCAGCCTGATTTCCCTGTTGGGGCTGTTCCTGCTGATTGGCGTGGTGAAGAAAAACGCGATCATGATGATCGACCTTGCCCTGCATCT GGAGCGCGAACAGGGAATGACGCCGCAAGAGTCGATTCGCAGCGCCTGCCTGCAGCGCCTGCGGCCCATTCTGATGACCACGATGGCCGCCATCCTGGGT GCCTTGCCGCTGCTGCTGAGTACCGCCGAAGGTGCCGAAATGCGCAAGCCGCTGGGTTTGACCATCATTGGTGGCCTGATCTTCAGCCAGGTCCTGACCC TCTATACCACCCCGGTGGTTTACCTTTATCTCGACCGTCTGCGCCATCGTTACAACAAATGGCGTGGCGTGCGCACCGATGCTGCTCTGGAAACTCCGCT
DNA Sequence for Gene
>A988_15638
ATGACCGAACGCCTGGCATTCACCTCCCGCCCGACAGGGCTGATTCGTCCATTCGCGCTGGGGCTTTGCGTCGTGCTGCTCAGCGCCTGCGCTGTGGGTC CGGATTACCAGAAGCCGTCGATGGCCGCGCCCGCGCAGTTCAAGGCTGCGCAGGGCTGGCGTGCGGCCACGCCAAGTGACGGGATGGCCAAAGGTGCATG GTGGGAGGTGTACAAGGACCCGCAGTTGAACGCTCTGGTCGAGCGCCTCAACACCTCCAACCAGACAGTCGCCCAGTACGACGCGCAGTATCGACAGGCA CAGACACTGGTGCGCAGCTCCAGGGCTGCCTTCCTGCCGACCCTCGACCTGACGACCGGCAAGACGCGCTCGGGGCAGGGCACTGGCACCTCGAACACCG GCACCAGTGCTTCGGGGATTCGCAACAGTTACAACGCGCAGTTGGGCGTCAGTTGGGAGGCCGACGTCTGGGGCAAGCTGCGTCGCGGGCTGGAAGCCGA CACCGCCAATGCGCAGGCGAGTCTTGCCGACCTGGCGGCGATGCGCCTGAGCCTGCAATCGGAACTGGTGCAGAATTACCTGCAATTGCGCGTGATCGAT GAACAGAAACGCCTGCTGGAGTCCACAGTGGATGCCTACCAGCGCTCCCTGACCCTGACGCAGAACCAGTACCGCGCCGGTATTTCCGGAAGTGATGCTG TTGCGCAGGCACAGACGCAACTGAAAAGTACCCAGGCCGATCTGATTGACCTGGCCTGGCAACGGGCGCAATACGAGAATGCCATCGCCGTACTGATGGG CATGGCGCCGGCAGACTTCAATCTGCCCGTCACCACTTCGATTCCGCAGTTGCCGCAGATCCCGCCAGGCCTGCCTTCGCAGTTACTCGAACGCCGCCCT GACATTGCCGCAGCCGAGCGCTCGGTCATGGGCGCCAATGCCAACATCGGCGTGGCCAAGGCGGCTTATTATCCGGACTTCACGCTGAGCATGAGCGGCG GTTACAGCAGCAGTACCTTTGCCAACTGGATCAGCCTGCCCAACCGCTTCTGGTCGGTGGGCCCGCAGTTGGCGCTGACCCTGTTCGACGGCGGAAAACG TTCGGCCGAGGTCGATCGCACCGAAGCGGTGTATGACCAGACTGTCGCCCAGTACCGGCAGACCGTGCTGAACGGCTTCCAGGAGGTCGAAAACTCTCTG GTTCAGCTCAAGGTATACGAGCAGGAAGCGGCCGTACGCCAGGAAGCGCTGGTCTCGGCTCGTGACTCGCTGCGCCTGACCAACAATCAATACAAGGCCG GGTTGATCGGTTACCTGGACGTCGTCAATGTCCAGGCCACCGCATTGAGCAACGAGCGCAGTGTGCTCAGCGTGCTGCAAAGCCGTTTGATTGCCAGCGT TCAATTGATCGCCGCACTGGGCGGGGGCTGGAATGCCGAGACAGGCCTGACGCTCCGGGAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATATTTCGGGTTCAAACACACTTTTTCAGTGAACTGTTCGCAGTAACCGGAAAAATAATAGCTATTCGCCATCTTTGCGACCAAGTGCCGCGACATTCTG CCGCGAATGCGTACAATCACCCGCACAAGATCGGCATGGACGCGCTCATTGGTTTCCAGGTGCGTTTATGTTGATTGGCAGTTACATCCCTTCACTCGTC GTAATCTCGATTCTCGTCGCTATTCTTGCTGCGTACACGGCCCTCGATCTGGTTGGCCGCATCGTCTCGGCCAGGGGCCGTGCCGTTCACGTATGGATCG CGGGAGGCGCGATCGCGATGGGCGTCGGTACCTGGTCAACGCATTTCATCGGTATGCTGGCGTTCGTATTGCCCATCAACCTTGGCTATGACGTGCCACT GGTGCTGCTTTCGCTTTTGATCGCCATCGGCTTTTCAGGGTTCGCCCTGTGGCTCGCCACCCAGCCGCGATTGCCCGCCCTGCAACTGAGCCTGGGGTCG
Amino Acid Sequence
>RND efflux system, outer membrane lipoprotein, NodT
MTERLAFTSRPTGLIRPFALGLCVVLLSACAVGPDYQKPSMAAPAQFKAAQGWRAATPSDGMAKGAWWEVYKDPQLNALVERLNTSNQTVAQYDAQYRQA QTLVRSSRAAFLPTLDLTTGKTRSGQGTGTSNTGTSASGIRNSYNAQLGVSWEADVWGKLRRGLEADTANAQASLADLAAMRLSLQSELVQNYLQLRVID EQKRLLESTVDAYQRSLTLTQNQYRAGISGSDAVAQAQTQLKSTQADLIDLAWQRAQYENAIAVLMGMAPADFNLPVTTSIPQLPQIPPGLPSQLLERRP DIAAAERSVMGANANIGVAKAAYYPDFTLSMSGGYSSSTFANWISLPNRFWSVGPQLALTLFDGGKRSAEVDRTEAVYDQTVAQYRQTVLNGFQEVENSL VQLKVYEQEAAVRQEALVSARDSLRLTNNQYKAGLIGYLDVVNVQATALSNERSVLSVLQSRLIASVQLIAALGGGWNAETGLTLRE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site