Pseudomonas syringae BRIP39023, A988_13739
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAACAACCTGCGTCAGAACTCGCGTGCACTGGGTCTGGGCGTACGTCGCTTGGGGATTTTCACCAGCATCGTACTGTTCGACCAGCGTGTGTCGATGTGG ACCTCCATCCTCGGTCTGACCGTCGCCCTGATCGCCAGCTTCAAGTATGGCGGCGCGTTCCTGTTGATGTATCTGCTGTGGATCGGCATGACCCGTCTGA TCCTCACCCTGCTGCTGTCCCTCTCGGGACACAGGATCGGGCCTGCCTACCCGATCATTCTCTATTACAACCAGATCGTCGGCGCGCTGATGAAGATCTA TGTCTTCTTCCGCCTGGACCGCCAGTCCTGGACTCGCCAGGACACCAAACTAAGCCGCGACATGGCCAGCTTTCAGGGCTGGTTCAACACGTGGTCGTCC CGAACCATGACTTTCTCGGCTGGCACCATCTTCGTCGCTGTGCTGTTGACGATGGTTTGACCGGGCCAACGGATTAATCGCTTAAGTAGGAAAAATAGCC
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| DNA Sequence for Gene |
>A988_13739
ATGAATACAGCCGTGAATGCGAACGTCGTACATGAATCCGAAGCCCAGCGCCAACACGCGCGGATCAAGATCCCTGCCAAGCTGCGCCTGCTGAATGATC AGCCCAACGCGCCACTGGTACGTGTCGAAGACCTGTCGGCCGGTGGCCTGAGCTTCGTTGCTCCGTCCGGGCAGAAATTCAGCGAAGGGCAGATCGTCAA GGGACGCCTGCAATTCATCATCGACAACCTTGGCCTGGCCATGGACGTCGATCTGCAGGTGCGCTCGATCGACAACGCCAGCAACCGCATCGGTTGCCAG TTCCAGAATCTGGAACCTCAGGACATCGCTACCCTGCGCCACCTGATCACCTCGCACCTGTCCGGCGAAGTCGTCACCCTGGGTGAAGTGCTGGCCACGC TGCAGCGCGATAACTTCACCAAGGCACGCAAGGTCAAGGGCAAGGACAGCGGCATGAGCGCCATGGGTCGCCTGCGCGCCGTGACCTTCAGCCTGGGCGT GTTCATTGTCGGTCTGGCCGCTTTCGGCTTCATCTTCAAGACGATCTACGGCCTGTACTTCGTCAGCCATGCATCGGCCGGTCTGGTCACCATTCCAAGC ATGGACGTGACCATGCCGCGTGAAGGTACCGTACAAAGCCTGGTCGCCCAGAATGGCGAAGCCGCCAAAGGCGCGCCACTGGCGTCCTTCAACACCAGCA TGCTGGAAATGCTCAAGGGCAGCCTGACCGGTGAAGACCTGCAGCCGGCCAAGATCGAAGAGCTGTATGGCAAGCAGATGAGCGGCACCATGACCAGCCC GTGCGATTGCGTCGTGGCTCGCCAACTGGTTGCCGACGGTCAGTTCGCGTCCAAGGGTCAGGTGATCTTCCAACTGGTGCCACGCAACGCGCCGGCCACG GTTGAAGCTCGCTTCACCTATCGCCAGTTCAACGACGTCAAGCCAGGCACACGTGTCAGCTTCCAGATCGCTGGCGAAGACAAACTGCGCACGGGTCAGA TCATCAGCAGCACCAACCTGAGCGACGCCGACCTGTCCACCGACATCCGCGTGCAGATCAAGCCTGACGAAAGCCTGAGCAGCTCGCTTGCCGGTCGCCC TGTCGAAGTGGTCAGCGATCGCGGCCCGTCCGTGAACTGGCTGATCGATAAAGCAATGGCTGCGGGTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCATGAACAGCCCACTACGACGCCTGTCGACCCCCACGCTACTGAGCCTCGCCGTCGCGCTCGGCCTGAGCGGCTGTGCCGGCCTGCCTGATCAACGCCT TGCCAATGAAGCCCTGAAAAACGGCGACACTGCATTGGCGGAGCAGAACTATCGGCAGCTGGCGGACCTGGGCTACAGCGACGCGCAAGTCGGCCTGGCT GATATTCAGGTCGCGACTCGCGACCCGGCTCAGCTCAAGCAGGCCGAAGCTACCTACCGCGCTGCCGCGCAGACCTCCCCCCGTGCGCAGTCGCGCCTGG GCCGTCTGCTGGCTGCCAAGCCCGACGCTACCGAAGCCGAACATCGCGAAGCCGAAGGCCTGCTGAAAAAGGCCTTCGCCAATGGCGAATCCGGCACGCT GATCCCGCTGGCGATGCTGTATCTGCAATACCCGCACACCTTCCCTGAAGTGAATGCGCAACAGAAGATCAGTGAGTGGCGCGCTGCCGGTTATCCGGAG
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| Amino Acid Sequence |
>hemolysin D
MNTAVNANVVHESEAQRQHARIKIPAKLRLLNDQPNAPLVRVEDLSAGGLSFVAPSGQKFSEGQIVKGRLQFIIDNLGLAMDVDLQVRSIDNASNRIGCQ FQNLEPQDIATLRHLITSHLSGEVVTLGEVLATLQRDNFTKARKVKGKDSGMSAMGRLRAVTFSLGVFIVGLAAFGFIFKTIYGLYFVSHASAGLVTIPS MDVTMPREGTVQSLVAQNGEAAKGAPLASFNTSMLEMLKGSLTGEDLQPAKIEELYGKQMSGTMTSPCDCVVARQLVADGQFASKGQVIFQLVPRNAPAT VEARFTYRQFNDVKPGTRVSFQIAGEDKLRTGQIISSTNLSDADLSTDIRVQIKPDESLSSSLAGRPVEVVSDRGPSVNWLIDKAMAAGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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