Pseudomonas syringae BRIP39023, A988_09849

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae BRIP39023 genomic scaffold scaffold8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGGAAGGCCGCTTGCCCAAGGGCGGCGAAGACGCGTTATCACTGAGTGTCGACGGCACCGATTACACGAGCACCGGCACCCTGCTGTTTACCGATGTCGC AGTAGACCGGACCACCGGCCAAGTGTCGTTGCGCGCCCGCTTTGCCAATCCCAAGGGCGTGCTACTGCCCGGTATGTATGTGCGGGTGCGCACACCGCAG CGCGTCGACAGCAACGCTATTCTTGTCCCGCAGCGCGCCGTTCAGCGCTCCGGCGACGGTGCGGCACGCGTGCTGGTGATTACCCAGGACGGCACGGTCG AAGCGCGTCCGGTCAAAACCGGGGCGATGCAGGATTCGCGCTGGCAGATCACCGAAGGCCTGAAGGCAGACGAACAGGTCATTGTCGGCAATATGACCGG GCTCAGCGCCGGCGACAAGGTCGCGCGCAAATCGCCATCCGCCCAACCGCAGGCCAAGGCGCAATAAAGCCGCCTTCAGCGCGACCGAGGATCACTGTCA
DNA Sequence for Gene
>A988_09849
ATGTCTCTCTTCTTTATCAAGCGCCCCAACTTCGCCTGGGTACTTGCCCTGTTCATCCTGCTCGCCGGGTTGATGGCTCTGCCGTCCCTGCCTGTGGCGC AGTACCCGGACGTGGCGCCACCGCAGATCACCATCACCGCCACCTACCCCGGCGCATCCGCGAAGGTGCTGGCCGATTCGGTGACCAGCGTTATCGAGGA CGAACTGAACGGCGCCAAAGGGATGCTGTATTACGAGTCGACCAGCAACTCGACCGGCAGCGCGGAAATCAACGTGACGTTCGTGCCAGGCACCAACCCG GATCTGGCTCAGGTCGAAGTCCAGAACCGTATCAAGAAAGCCGAAGCACGCTTGCCGCAGACGGTCCTCAGCCAGGGCCTGCAGGTCGAACAGGCCAGCT CCGGTTTTCTGTTGATCTACACCCTGAACTACAAGGACGGCGCGACCAACAAGGATACCGTCGCGCTGGCCGACTACGCGGCACGCAACGTCAATAACGA AATCAGCCGGGTGAACGGTGTCGGCAGGCTGCAATTCTTCGCTGCCGAAGCCGCGATGCGGGTATGGATCGATCCGCAGAAGCTGGTGGGCTTCGGGTTG TCCATCGACGACGTGAATGCCGCGATTCGGGCGCAGAACGTGCAGGTTCCGGCAGGCAGCTTCGGCAGCAGCCCGGCCTCGTCACTGCAGGAATTGACGG CCACCCTGGCGGTAAAGGGCACTTTGGACAACCCGGAAGAGTTCGGGCGCATCGTTCTGCGTGCCAACGAAGACGGCTCTGCGGTGCACCTGTCCGATGT GGCGCGTGTAGCGGTCGGCAGCCAGGATTACAGCTTCGAATCACGTCTGAACGGGCAACGTGCCGTCGCCGGTGCCGTACAGCTGTCGCCGGGCGCCAAC GCGATCCAGACGGCCAGAGCCGTCGAGCAGCGGCTCACTGAGCTGTCGGTCAATTTCCCGGAAGGCGTCGGGTTTTCGATACCGTACGACACCTCGCGCT TCGTCGACGTAGCCATCGACAAGGTGATCTACACCCTCATCGAAGCCATGATCCTGGTGTTTCTGGTGATGTTCCTGTTTCTGCAGAACATCCGTTACAC GCTGATACCGACCATCGTGGTCCCGGTGTGTCTGGCGGGAACGCTGGCGATCATGTACCTGATGGGCTTCTCGGTGAACATGATGACCATGTTCGGCATG GTGCTGGCCATCGGTATTCTGGTCGACGACGCCATTGTGGTCGTGGAAAACGTCGAGCGGATCATGGCTGAAGAAGGCCTCTCTCCCGCCGCCGCAACGG TCAAGGCGATGCAGCAGGTTTCCGGAGCGATTTTCGGCATCACGCTGGTCCTGGCCGCTGTGTTTCTGCCACTGGCGTTCATGGGCGGCTCGGTCGGGGT CATCTACCAGCAGTTCTCGCTGTCGCTGGCCGTGTCGATTCTGTTTTCAGGTTTCCTGGCCCTGACGTTCACCCCGGCGCTGTGTGCCACGCTGCTCAAG CCGATCCCGGCCGGGCATCATGAAAAGCGTGGTTTCTTCGGTGGTTTCAATCGTCTGTTTGGCACGTTCACCGACCGTTACGAGCGCGTCAGCTCGAGCA TGATCAAGCGCGCCGGCCGCTACATGCTGCTGTACCTCGGTATCGTCGGTCTGCTGGGCTTTTTCTACCTGCGCCTGCCGGAGTCCTTTGTGCCCGTTGA AGATCAGGGCTATCTGATCATCGATGTGCAACTGCCTCCCGGCGCCACCCGGTCGCGTACCGACCTCACCGCGCAATTGCTCGAGAACTACATGCTGTCC CGCGAAGCCACGGGTGCGGTGACCATGCTGCTGGGGTTCAGCTTCTCGGGCATGGGTGAAAACGCCGGTCTTGCGTTCCCGACCCTGAAGGACTGGTCGG AGCGCGGCAAGGGCCAGTCAGCGGCTGAGGAAGCGGCGGCATTCAACCGGCATTTTGCAGGGCTCGGCGACGGCACGGTGATGGCGGTGACGCCACCGCC TATCGACGGCCTGGGCACCTCGGGCGGCTTCTCGCTGCGCCTGCAGGACCGTGCAAGCCTGGGCCGCGAAGCCCTGCTGGCGGCACGCGACAAGCTGCTC GGCGAGGCCAACGGCAACCCGAAGATTCTCTACGCGATGATGGAAGGTCTGGCCGAAGCGCCGCAATTGCGCCTGAACATCGACCGCGAAAAGGCCCGGG CGCTGGGCGTGAGTTTCGAATCGATCAGCAATGCGCTGTCCACCGCTTTCGGTTCCTCGGTGATCAGCGACTTCGCCAATGCCGGACGTCAACAGCGCGT GGTCGTGCAGGCCGAACAAAGTTCGCGAATGACCCCGGAAAGCGTGCTCAAGCTCTACGTACCCAATAGCAGCGGCACGCTGGTGCCGCTGGGCGCCTTC GTTTCGACGCACTGGGAACAAGGCCCGGTGCAGATCGCCCGCTACAACGGCTACCCCGCATTCAGGATTTCCGGTGATGCAGCACCGGGCGTCAGTACCG GTGAGGCCATGGCGGAAATCGAACGGATCGTTTCCGGGCTACCGCAAGGCATCGGTTACGAATGGACTGGCCTCTCCTATCAGGAAAGAGTCGCCAGCGG CCAGGCGGTCGGACTGTTCGGCCTGGCGCTGCTGGTGGTGTTCCTGCTGCTGGTCGCGTTGTATGAGAGCTGGGCAATCCCGCTGGTGGTGATGCTGATC GTTCCCGTCGGCGCGCTGGGCTCCGTGCTGGCCGTGACGGCCGTCGGCATGCCCAATGATGTGTATTTCAAAGTAGGCCTGATCACCATCATCGGGCTGG CCGCGAAAAACGCGATTCTCATCGTCGAGTTCGCCAAGGAACTCTGGGATCAGGGCCATTCCCTGCGCGACGCGGCACTTCAGGCTGCACGGCTGCGCTT TCGGCCGATTGTCATGACTTCGCTGGCCTTCATCCTTGGCGTGGTGCCGCTGACCCTGGCCACCGGCGCAGGCGCTGCAAGCCAGCGCGCCATCGGCACT GGCGTCATCGGCGGCATGCTCAGCGCGACGCTGCTGGGCGTGGTTCTGGTGCCTATATTCTTTTTCTGGGTGTTGACCGTGCTGCGCCGCAAACCGCATG CGCAACAGATTACCGACGATCAGCAACTGACGGAGAAGCGATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAGCAAGCGGCCAGCGGGTATCAATCCCGCTGGCCCGACCTTGGCTCCGTGTCGGCTTGCGCGTCCGTAGAGGACTTGACGCGGGTCCAGGCCGGTAAT GTGCCGGTCGCGATTTCCGACGCGACATTCACCCGGTTGCGACCCTGCGACTTGGCGGCATACAACGCGCGGTCGGCAAGCTCAATCAGGCCACGCTGAT CGAGTTGGCGATCGGTGCCGACGAATGTCGCGACACCGAGGCTGATCGTCACGATGCCAAACGGGCTGGCGGGATGCTCGATCTGCTCGTCACGGATGGC CTGCAGGATGTTCTCGGCCACCTGGCGAGCGTTCGACTCGTCAGTACCTGGCAACACCACGGCGATCTCTTCACCGCCATAACGGGCGGCGACGTCGCTG GGACGACGAATGAACTGCTCAACCACTCGGGCCAGCGCAATCAGGCATTCGTCACCGGCCAGGTGGCCGTAATGATCGTTGTAGCGTTTGAAATGATCGG
Amino Acid Sequence
>hydrophobe/amphiphile efflux-1 HAE1
MSLFFIKRPNFAWVLALFILLAGLMALPSLPVAQYPDVAPPQITITATYPGASAKVLADSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNP DLAQVEVQNRIKKAEARLPQTVLSQGLQVEQASSGFLLIYTLNYKDGATNKDTVALADYAARNVNNEISRVNGVGRLQFFAAEAAMRVWIDPQKLVGFGL SIDDVNAAIRAQNVQVPAGSFGSSPASSLQELTATLAVKGTLDNPEEFGRIVLRANEDGSAVHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGAN AIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRFVDVAIDKVIYTLIEAMILVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNMMTMFGM VLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLK PIPAGHHEKRGFFGGFNRLFGTFTDRYERVSSSMIKRAGRYMLLYLGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRSRTDLTAQLLENYMLS REATGAVTMLLGFSFSGMGENAGLAFPTLKDWSERGKGQSAAEEAAAFNRHFAGLGDGTVMAVTPPPIDGLGTSGGFSLRLQDRASLGREALLAARDKLL GEANGNPKILYAMMEGLAEAPQLRLNIDREKARALGVSFESISNALSTAFGSSVISDFANAGRQQRVVVQAEQSSRMTPESVLKLYVPNSSGTLVPLGAF VSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGEAMAEIERIVSGLPQGIGYEWTGLSYQERVASGQAVGLFGLALLVVFLLLVALYESWAIPLVVMLI VPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWDQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGT GVIGGMLSATLLGVVLVPIFFFWVLTVLRRKPHAQQITDDQQLTEKR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site