Pseudomonas syringae BRIP39023, A988_08259
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGTGGCCAGGGCGGCCCGCTGATGCACGTCATTGCCGCCAAGGCGGTATGTTTCAAGGAAGCCATGGAGCCCGCCTTCAAGGCCTATCAACAGCAGG TCATCGACAACGCACAAGCGATGGCGCAGGTGTTCATCGATCGGGGCTTCGACGTGGTCTCCGGCGGCACCGACAACCATCTGTTTCTGGTCAGCCTGAT CCGTCAGGGCCTGACCGGCAAGGACGCAGATGCGGCGCTGGGGCGTGCGCACATTACCGTCAACAAGAACTCGGTGCCCAACGACCCGCAGTCGCCGTTC GTGACGTCCGGCCTGCGCATCGGCACACCGGCCGTGACCACGCGCGGCTTCAAGGTGACCCAGTGCATCGAGCTGGCAGGCTGGATCTGCGACATCCTCG ACAACCTCGGTGATGCCGATGTCGAGGCTGACGTTGCCAGCCAGGTCGCCGCCCTGTGCGCCGATTTTCCGGTTTATCGCTGAGTCAGGAGTAGCCTCAC
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| DNA Sequence for Gene |
>A988_08259
ATGCAGCATTACTCAGGCTTCGGCCTTCTCAAGCATTCCCTCAGCCACCATGAAAACTGGCAGCGCATGTGGCGCACGCCGACCCCGAAAAAGGTCTACG ACGTGGTCATTGTCGGCGGCGGCGGGCACGGTCTGGCGACGGCCTATTATCTGGCCAAGGAGCACGGCATCACCAACGTGGCCGTGGTCGAGAAAGGCTG GCTGGGCGGCGGCAACACGGCTCGCAACACGACCATCGTGCGCTCCAATTACCTGTGGGACGAGTCTGCCCACCTATATGAACATGCGATGAAATTGTGG GAAGGCCTGTCCCAGGACCTGAACTACAACGTCATGTTCTCCCAGCGCGGCGTCTACAACCTGTGCCACACCCTGCAGGACATGCGCGACTCCGAGCGCC GTGTCAGCGCCAACCGGCTTAACGGCGTGGACGGCGAATTGCTCAACGGCCAGCAGGTCGCCGAGGAAATCCCGTACCTGGACTGCTCGAAAAACACCCG TTACCCGATCATCGGCGCAACCGTTCAACGCCGTGGCGGCGTAGCTCGTCACGACGCAGTGGCCTGGGGCTTTGCGCGTGCCGCCGACGCCCTAGGCGTG GACCTTATCCAGCAGACCGAAGTCATCGGCTTTCGCAAGGAAAACGGCGTGTGCATCGGAGTGGAAACCAACAAGGGTTTCATCGGTGCCAAACGGGTCG GCGTGGTAACCGCCGGCAACTCCGGGCACATGGCCAAGCTGGCAGGCTTCCGTCTGCCCATCGAATCGCATCCGTTGCAGGCACTGGTCTCCGAGCCGAT CAAGCCGATTATCGACAGCGTCATCATGTCCAACGCGGTACACGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGTGCCGGCATCGACAGT TGGGTCGGCTACGGCCAGCGCGGCTCGTACCCGGTGATCGAACACACCATCCAGGCCATCGTCGAGATGTTCCCGGTACTGTCCCGCGTGCGCATGAACC GTCAATGGGGCGGCATCGTCGACACCACGCCGGACGCCTGCCCGATCATTTCCAAGACCCCGGTGCCGAACATGTTCTTCAACTGCGGCTGGGGCACAGG CGGCTTCAAGGCCACGCCGGGCTCGGGCAACGTATTTGCCGCCAGCCTGGCCAAGGGCGAGATGCACCCGCTGGCCAAGCCGTTCTCCATCGACCGTTTC CACAACGGCGCACTCATCGACGAACACGGCGCTGCAGCCGTAGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAACCCGACCATGCTGCATATCTTCTGTCCTCACTGTGGCGAACTGCGCTCCGAAGAGGAATTCCACCCGTCCGGTCAGGCGCATATCCCGCGCC CGCTGGACCCCGGTGCCTGCACCGATGAGCAATGGGGCGATTACATGTTCTTTCGCGATAACCCGCGCGGCCTGCATCACGAACTGTGGATACACGCCGC CGGTTGCCGCCAGTATTTCAACATGACGCGCAATACCGTGACCTACGAGATTCTCGAGACCTATCCGATCGGTACCAGGCCGCAGTTCACGGATCAGGGA GAAAAGGTATGAGCCAGACCCATCGCCTGCCCAACGGCGGCCGCATCAACCGCAGCAAGGTGCTCAACTTTACTTTCAACGGCCAGACCTACCAGGGCTT TGAAGGCGACTCACTGGCCTCTGCCCTGCTGGCCAACGGCGTCGATATCATCGGCCGCAGCTTCAAATACTCCCGCCCGCGCGGCATCTTCGCAGCGGGC
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQHYSGFGLLKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNGQQVAEEIPYLDCSKNTRYPIIGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDS WVGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAKPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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