Pseudomonas syringae BRIP39023, A988_08184
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCACTCATAGCGAGATCGTTGGTGCGCTGTATCGCGATCATCGCGGTTGGCTGCTGGCCTGGCTCAGACGCAATGTCGCCTGCCCGCAACGTGCTCAGG ATTTGAGTCAGGACACGTTTGTGCGCTTGCTGGGGCGCCATGAATTGCTCACGCCCAGAGAACCGCGTGCTTTCCTGGCAACCGTCGCCAAAGGCTTGAT GTTCGATCACTTCCGACGCGCTGCGCTGGAGCAGGCCTATCTTGGGGAGTTGATGCAGGTGCCCGAGGCCGAGCAGCCCTCTCCGGAAGAGCAGATGCTG ATTCTGGAAGACCTCAAGGCGATCGACAGCATGCTCGGCACATTGTCCAGCAAGGCGCGGGCAGCCTTTCTGTACAGTCGCCTCGACGGCATGAGTCACG CTGAGATTGCCGAGAGGCTGGGCGTTTCGGTCTCGCGCGTCAGGCAATACCTGGCTCAGGCCATGCGTCAGTGCTACGTGGCACTTTACGGTGAGCCGAC
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| DNA Sequence for Gene |
>A988_08184
GTGAACGCCAGACCGGTCTCTGCCCGCGTGCTCGATGCGGCCATCCAGTGGCAACTGAACATGGACAGCAACGACGGCAATGACGCCGAACTGGCGCGCT GGCTGGCTGCCGATGAAGAGCATGCCCGGGCCTGGAGCCAGTTGGGCATGGTCAATCAGCGCTTTGCTTTGCCCGCAGGTCCGGCACGCAAGGCGTTGCA ACAGTCGCCGGGTGCCCTGCGACACAGTTTGCGCAAGCTCGGTGGCGGTCTGGCCGGGGTGTTCATGGCCTTGGGTCTGGCATTGTTCGTCGGCGACCGC TATCTGCCGATAGATTACTGGCTTGCCGACCAGCGCACCGCCACCGGTGAACAGCGTGACGTGCGTTTGGCGGACAACACTCTGATTCGCCTTAACACCC ACAGCGCAATCGATGTGCGCTTCGATGCGCAGCAACGTCGGGTCATTCTGCAGGACGGTGAAATACTGGTGCAGACCGGCGATCATGACGACCCGCGGCC CTTCATCGTCGAGACGGCGGATGGAAAGATGCGCGCTCTGGGAACGCGTTTTCTGGTCCGGCGCGAGTCCGATGGAACACGGCTCAGCGTGTTGCAATCG GCGGTCGTCGCCCACCCGCGCAATGCTTCCGGTGAACAGGTTCTGCGCGAGGGCCAACAGGTGCTGCTGACCCGCAACGGACTTGGCCCGTTGCTTGGCA TGCCTTCCGGTGTCGACGCCTGGACGCGCGGCATGCTGGTGGTGGACAACGCGCGGCTGGCGGACATGCTCGCTGAACTGGGGCGTTACCGGGCAGGACA TCTGGGCGTCGACCCGAAAGTGGCTGATCTGCGGGTTACCGGTACCTTCCCGTTGAAAGACACTGACCTGGCGCTCAGGGCGCTGCTGCCGACCTTGCCT GTGCAGATAGAACAGCACACGGCGTGGTGGGTGTCCGTGCTGCCCAGGGATCAACAGCCCGGTAATCCTCCGGCAAAACTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACATACCCGTTCATGCAGACAGCGGATCGCCCTGACACTTTTTTGGTTTCGAGCGGCTTAGTCTTACAAGTCATTTCGGGGACGCGCTTAGCGTTGCGT CTCTTCGTCTGTGGATAAACCATGAAAAGCCAAACCGTGCGCCGCTGGTCCATCGTGCATACCTGGAGCAGCCTGATTTGCACCCTGTTCCTGTTGATGC TGGCTGTCACCGGCCTGCCGCTGATCTTTCATCATGAAATCGATCATCTGCTCGGCGACGCTCCGCATTACCGGGAGATGCCTGCCGACACACCACGCCT GGATCTGGAGCAACTGGCCAGGGCAGCCGAAGCGCATCGCCCCGGTGAGGTGATGCAGTATTTCGGCTGGGACGACGAAGACCCCAATGGCGTAATGGCA ATCACCGCTGCAACCGCCGGCACCGAGCCCAACTCCTCGCACACCTTCGCCCTCGATGCGCGCACCGGTGAGGCGCTGGAGATGCCTTCTGCCAACGGCG
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| Amino Acid Sequence |
>FecR protein
MNARPVSARVLDAAIQWQLNMDSNDGNDAELARWLAADEEHARAWSQLGMVNQRFALPAGPARKALQQSPGALRHSLRKLGGGLAGVFMALGLALFVGDR YLPIDYWLADQRTATGEQRDVRLADNTLIRLNTHSAIDVRFDAQQRRVILQDGEILVQTGDHDDPRPFIVETADGKMRALGTRFLVRRESDGTRLSVLQS AVVAHPRNASGEQVLREGQQVLLTRNGLGPLLGMPSGVDAWTRGMLVVDNARLADMLAELGRYRAGHLGVDPKVADLRVTGTFPLKDTDLALRALLPTLP VQIEQHTAWWVSVLPRDQQPGNPPAKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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