Pseudomonas syringae BRIP39023, A988_06844
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGTTGCTCAAACCGCTGGGCATCAAGGCGCCGGTCTATCCGCTGAAGGGCTACTCGCTGACCGTGCCGATCACCAACCCGGACATGGCACCGACTTCG ACCATTCTCGATGAAACCTATAAAGTCGCGATCACCCGTTTCGACAACCGGATTCGCGTCGGTGGCATGGCGGAAATAGCCGGTTTTGACCTGTCGCTCA ATCCGCGTCGACGCGAAACACTGGAGATGATCGTCGGTGACCTCTATCCTCAGGGCGGCGACCTGACCCAGGCCGATTTCTGGACCGGGTTGCGTCCGAC CACGCCCGACGGCACACCGATTGTGGGTGCAACACCGTTCCGTAACCTGTTCCTCAATACCGGCCATGGCACTCTGGGCTGGACGATGGCGTGTGGTTCC GGTCGCTTGCTGGCAGACCTCATTGCCCGCAAGACACCCCGTATCAGTGCTGAAGGCCTTGATATCTCTCGTTACGGCAACACTCAGGAGAATGCACAGC
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| DNA Sequence for Gene |
>A988_06844
ATGTCAATCCAGCGCCAGCTCACCAATGAGCGCATGAGTCAGGTCGTTGTCCACAATGGCACCGTCTATCTGTCGGGCCAGGTCGGCAATGACATGACTG CGGATGTCGAGCAGCAGACCCGAGAGGTACTGAACAGCATCGAGCGCCTGCTTGACCTGGCCGGCACCGACAAGACGCGTATCCTGTCGGTCACCATTTA CCTGAAAGACATCAATGCCCACTTCGCCGGCATGAACAGCGTCTGGGACAAATGGCTGCCCAAGGGTTTCGCGCCTGCACGCGCAACGGTCGAGGCCAAG TTGTGCCAGCCCGAAATGCTTGTTGAACTGTCGGTGGTCGCCGCGCTGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTTGTTGCCCGGCGCGTCCCTGCGTCGGGTTCGTCCTCTCCCTTTCCATCCTTTCAGGCAAGTAACGTCATCATGCGTCCAGCCCGCGCCTTTATCGA TCTTCAGGCACTGCGTCACAACTACCAATTGGCCCGTGAAAACAGCGGCGGCAAAGCGCTCGCCGTCGTCAAGGCCGATGCCTATGGTCACGGCGCGGTG CGCGTCGCGCAGGCACTGGAGTCACAGGCCGACGGTTTTGCAGTGGCTTGCATTGAAGAAGCTCTGGAGCTGCGTGCGGCAGGCATTCGTGCGCCGGTCC TGCTGCTTGAAGGCTTTTTCGAGGCCGACGAGCTGGCGCTGATTGTCGAGCATGACCTGTGGACTGTTGTGCACGCAGTCTGGCAACTGGAGGCCATCGA GCAGGCGCGCCTGGGCAAGCCGATAACGGTCTGGCTCAAGCTCGACACCGGCATGCACCGGGTTGGCCTGCATCCTCACGAGTACCAGGCGGCTTATCAG
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| Amino Acid Sequence |
>endoribonuclease L-PSP
MSIQRQLTNERMSQVVVHNGTVYLSGQVGNDMTADVEQQTREVLNSIERLLDLAGTDKTRILSVTIYLKDINAHFAGMNSVWDKWLPKGFAPARATVEAK LCQPEMLVELSVVAALP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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