Pseudomonas syringae BRIP39023, A988_06704
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCTTTTTCAGGAGTTGCTGGCTTGATCGAAACGTTTCCAGCCATCAGGCAACAGGTTAAAAGCATGCCGTTGGTGGCATGCCGCTTGATGACTGGT GCTGTCCGCTTGTAAACTACCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGCATTTGCTACGAGGAATACCCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAACCAAAGCTGGCCTGGG AAAACGACAAGCCTACCGTTATGGCCCTGCGTGAAATCGCCGCTGGCGTAATGGATTACTCTGTAATCGCAGAAGCTGAAATCGTTGAAGATGAGCCATT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCAGGTCGACGTAGTACGGCGCAGGGTAAAAGCCATTGGCAAGGGGTAGCGCC
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| DNA Sequence for Gene |
>A988_06704
TTGCCGAGCATAGACGCCCTCGCCGACAGACTGTCGGCCTACCTCGGCAAGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGATGGCCAACGCCGTCGCAGCGGTGAAGCCTACGTCACCCATCCCCTTGCGGTGGCGAACATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTCATCGAAGACACCGGGATTGCCAAGGAAGCGCTCAGCGCCCAATTTGGCGAGACCGTCGCGGAACTGGTCGATGGGGTC AGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATTCGCGTCATTC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTCCTGTCTGGCGAAAAGCGTCGGCGCATCGCCAAGGAAACCCTCGAAATCTATGC GCCCATCGCCAATCGGCTGGGCATGCACAGTGTGCGTATCGAATTCGAGGACCTGGGCTTCAAGGCGATGTACCCGATGCGCTCCTCGCGAATCAACCAG GCGGTCAAGCGCGCCAGGGGCAATCGCAAGGAACTGGTCAACAAGATCGAAGAGTCCCTGAGTCATTGTCTGGCCGTCGATGGCATCGAAGGCGACGTCA GTGGGCGGCAGAAACATCTGTATGGCATCTACAAGAAGATGCGCGGCAAGCGTCGCGCCTTCAACGAGATCATGGATGTCTACGCGTTCCGCATCATCGT CGACAAGGTCGACACCTGCTATCGCGTGCTTGGCGCTGTACATAATTTGTACAAACCGCTGCCCGGCCGATTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCCCTGCACACGACGTTGTTCGGGATGCATGGCGTGCCTATCGAGATCCAGATTCGCACCCGCGAAATGGAAGAAATGGCCAACAACG GCATCGCGGCGCACTGGCTGTACAAGTCCAGTGACGATGAGCAGCCCAAGGGCACTCACGCTCGTGCCCGACAGTGGGTCAAGGGCGTACTGGAAATGCA GCAGCGCGCCGGCAACTCTCTGGAATTCATCGAAAGCGTCAAGATCGACCTGTTCCCGGACGAGGTCTACGTTTTCACCCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCTACGGCAGTGGATTTCGCCTACGCGGTACACACCGATGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGCCGCTTGGCACCGC TTTCCGAACCGCTGCAAAGTGGCTCGACGGTCGAGATTGTCAGCGCACCCGGCGCACGTCCGAATCCGGCCTGGCTGAACTTCGTCGTCACCGGCAAGGC GCGCACCCATATTCGTCACGCACTCAAGCTGCAACGCCGCTCCGAGTCGATCAATCTGGGCGAGCGACTGCTGAACAAGGTCCTCAACGGCTTCGAATGC AGCCTCGACAAGATCAGCCAGGAACGCATTCAACTGGTGCTCAACGAATACCGTGTCGAAGTGCTGGAAGACCTGCTCGAAGACATTGGCCTGGGTAACC GCATGGCTTATGTCGTTGCCCGCCGCCTGCTGGGCGAAGGCGATCAGTTGCCGAGCCCTGAAGGTCCGCTGGCGATTCGTGGCACCGAAGGCCTGGTGCT CAGCTACGCCAAGTGCTGCACACCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCTGCAGGCAAGGGCATGGTTGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGTTATCCTGGGCCAAGGACGTGACTGGCGAATTCAACGTCGAGCTGCGTGTCGAACTTGAGC ATCAGCGCGGTCTGATCGCGCTGCTGGCCAGCAGCGTCAACGCGGCGGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCTCGTGTGATCAAGAAACTGCGCGCCCTGACCGGTGTCACACGCATCACCCGGATGCGC GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATCCCACTATCAGGAGTTCTCATGACCAAGACTGTCATCACCAGCGATAAAGCCCCTGCGGCCATCGGCCCTTACTCACAGGCCATCAAAGCTGGCA ATACCGTCTACATGTCTGGACAGATCCCGCTGGACCCGAGCACCATGGAACTGGTTGAAGGCATCGAAGCCCAGATCACTCAGGTTTTCGAGAACCTCAA GTCGGTTGCCGAAGCGGCGGGCGGATCGTTCAAGGACATCGTCAAATTGAACATCTTTCTGACCGACCTGGGCCACTTCGCCAAGGTCAACGAGCTCATG AGCACCTATTTCACTCAGCCTTATCCGGCCCGTGCGGCCATCGGCGTTGCGGCATTGCCGCGTGGCGCCCAGGTTGAAATGGACGCGATTCTCGTCATCG AATAAATCCCCGACGGAGCGTGCCTTGCGCTCCGTTCTCCCTGAAGGAAGGAATCCGTTATGCGCTCCGCGCTCGCCATCTCGCTGCTCGCCGTCATTAT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSAYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSVRIEFEDLGFKAMYPMRSSRINQ AVKRARGNRKELVNKIEESLSHCLAVDGIEGDVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLNGFEC SLDKISQERIQLVLNEYRVEVLEDLLEDIGLGNRMAYVVARRLLGEGDQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVTRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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