Pseudomonas syringae BRIP39023, A988_00814
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACAGGCTGGGCCGCAGCCTTGGGTTGGCGAGCCTTGCGGCTGCGCTCTATCGGCCAGCGGATCAGCACGAACAGCAGGTACGCGGCGAAGGCGAACATGC CGTACATGGCAAGGTCCGACACGGCGGTCCAGACATTGCTGCCGACCTTGAACATCAGGTCGAGCGCGGTGATCGCCACGGCTGGCGCCATCGCGTCCTT GGCAGGGTCGACCATGGTCGGCGTAAACAGCAGCACCGCGACCGCCACCAGCAACGGCTCCTTGAGATACCGCCACATCCAGCGGGTCATCAGAAACCAT ACCAGCAGGCAACCCAACGCGGCGAAGGCGTAGACGCTCCAGGCGATCAGATAGTCGTTTTCGGTCATGACGTCCGTGGTAAGCCAGGTAAAGAGGCGCT TATGATAACGGCTTTTGCCTGACGCGGCTTGCCTCGCTGCAGTATTCGGTTCAGCGTGTACCGATATTTTCCTGATTGATGCCTTAACAGAGAGCCCAGC
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| DNA Sequence for Gene |
>A988_00814
ATGTCCTTCTCGAATGCAACCTCCAGCGCCCCGATCGCTCGCAAGGCCGACGGTTCCGACCCCTACGCCTGGCTGCAGAACCGCGACACTGACGAAGTGC TCGACTACCTCAAGGCCGAAAACGCCTGGCAGGAGCAGCAACTGGCAGAGCAGGCCGGACTGCGCGATAGCCTGTTCGAAGAGATCAAGGGCCGTATCCT CGAAACCGACCTGTCGCTGCCCTCCCCCTGGGGGCCGTACCTTTATTACACCCGCACCACACAAGGCGACGAATACGCCCGGCACTACCGCTGCCCGCGC CCGGCCGACGACAGCAACACGGTGGATGAAAACGCTGAGGAGTTGTTGCTCGACCCCAACGAGATGGCCGATGGCGGCTTTTTCTCACTGGGCGCGTTCA GCATCAGCCCGGATCACCAGCGTCTGGCCTACAGCCTGGACACCAGTGGCGACGAGATATACGAGCTGTACGTCAAAGAGCTGAGCACCGGTCAGATCAG CAGCCTGCCTTTCGAAAACTGCGACGGCAGCATGACCTGGGCCAACGACAGTCAGACCCTGTTTTTCGGCGAGCTGGACGAAACCCATCGTCCGGGCAAG CTGCATCGCCATACTCTGGGCACGTCATCAGCCGAGCTGGTGTTCGACGAGCCGGACGGCAGATTCTTCCTGCATTGCTTCCGCAGCAGCTCAGAGCGCC AACTGATCATTCTGCTCAACAGCAAAACCACCAGCGAAGCCTGGGTGCTGGACGCCGATCATCCGCAACAGGCCTTCACCTGCCTCGCGCCACGCAGCGA AGGCCACGAATACTATCCGGACCACGGGCTGCTCAATGGCGTCTGGACCTGGTTCATCCGCAGCAATCAGAGCGGCATCAACTTCGCGCTGTATCACGCT GCGCAACAAGCCAATGATGTACCGGGGCGCGAGGACTGGCAGACACTGGTCGCGCACGACGACCAGGTCATGCTCGAAGGCGTCAGCCTCAACGCCAAAG GCATCAGTCTGAGCCTGCGCGAGGGCGGCCTGCCGATCATCGAAGTGCGTCCGCAGGCCCTGCCGACTTATCGCGTACAGCTGCCTGACGCCGCGTACAG CCTGTACGTGCAGGACACGCTGGAATTCGACAGCGACAAGATTCGCTTGCGCTACCAGTCGCTGAACCGTCCGGCCCAGGTCCGCCAATTGACCTTGGCC AGCGGCGAGCAGGTAGTGCTCAAGGAAACCCCGGTACTGGGCACCTTCGACGCCGATGGCTACGTCAGCCAGCGTTTGTGGGCCACGGCCAGCGATGGCA CCCAAGTGCCGATCAGCCTGGTGGTCAAGCGCGAACTGGCCGGACAGGCCACCCCGCTGTATCTGTACGGCTACGGCGCCTATGGCGAGAGCCTCGACCC GTGGTTTTCCCACGCCCGTCTGAGCCTGCTCGACCGTGGCGTGGCGTTCGCCATTGCTCATGTGCGCGGCGGCGGCGAGCTGGGCGAGGCCTGGTATCGC AACGGCAAGCAGGAACACAAACAGAACACCTTCGGCGATTTCATTGCCTGCGCCGAACACCTTGTCGCCCAGGGTCTGACCAGCGCTGAACAACTGGTGA TCAGCGGTGGCAGCGCCGGCGGCCTGCTGATCGGTGCGGTGCTCAACCAGCGGCCCGAGCTGTTCAAGGCAGCGATTGCCGAAGTGCCGTTCGTCGACGT GCTGAACACCATGCTCGACCCGGACCTGCCGCTGACCGTCACCGAATACGACGAATGGGGCAACCCGCAGGAGCCCGAGGTCTACGCGCGTATCAAGGCT TACGCGCCCTACGAAAACGTCACGGCCCAGGCCTACCCGGCCATGCTGGTCATCGCCGGTTATAACGACAGCCGCGTGCAGTATTGGGAAGCCGCCAAGT GGGTCGCGAAGTTGCGCGCCACCAAGACCGACGACAATCCGCTGCTGCTCAAGACCGAACTGGGTGCCGGACACGGAGGCATGAGCGGTCGCTATCAGGG CTTGCGTGACGTGGCGCTGGAATACGCGTTTATCTTCAAGGTATTGCAGATCGCTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTTGGTGTGAAACACCTGTCTTACTAGGATCGGGGGCAGCGGAGTTGCCCCTTTGTCAGGATTACCAGACCTCACATGTCAGAACCACTGTCCAACCTG AACAACGCCATACGCGACATGCTGCTGGATTGCGGCCTGTTCGACACGCTGCTGCCGGGCGATTTCTTTACCGTAGCCGGCTATTTCAGCATTACCGATA TCGATAAAGGCGAGACCATCTTCGCCGAGGGCGATGCCGGAACCTTCATGTGCATCATCCATCAGGGCACCGTGTCTGTGCAGAAGCTTGCTGCAGACGG TCAACAGGTGGAAATCGCCGTTCTGCGGCGCGGACGCGCCTTCGGAGAAATGGCGGTGCTGGATGGCGAGCGCCGCTCCGCCAGTTGTATCGCAGCCACC AGTTGCCAGCTATTGAACCTGGGCCGTGATTCGCTGGACAAGATGCTCGAGGACGCGCCGAAAATCGCCGCCAAGATCATTCGCGCCCTGGCCATCTCGT
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| Amino Acid Sequence |
>oligopeptidase B
MSFSNATSSAPIARKADGSDPYAWLQNRDTDEVLDYLKAENAWQEQQLAEQAGLRDSLFEEIKGRILETDLSLPSPWGPYLYYTRTTQGDEYARHYRCPR PADDSNTVDENAEELLLDPNEMADGGFFSLGAFSISPDHQRLAYSLDTSGDEIYELYVKELSTGQISSLPFENCDGSMTWANDSQTLFFGELDETHRPGK LHRHTLGTSSAELVFDEPDGRFFLHCFRSSSERQLIILLNSKTTSEAWVLDADHPQQAFTCLAPRSEGHEYYPDHGLLNGVWTWFIRSNQSGINFALYHA AQQANDVPGREDWQTLVAHDDQVMLEGVSLNAKGISLSLREGGLPIIEVRPQALPTYRVQLPDAAYSLYVQDTLEFDSDKIRLRYQSLNRPAQVRQLTLA SGEQVVLKETPVLGTFDADGYVSQRLWATASDGTQVPISLVVKRELAGQATPLYLYGYGAYGESLDPWFSHARLSLLDRGVAFAIAHVRGGGELGEAWYR NGKQEHKQNTFGDFIACAEHLVAQGLTSAEQLVISGGSAGGLLIGAVLNQRPELFKAAIAEVPFVDVLNTMLDPDLPLTVTEYDEWGNPQEPEVYARIKA YAPYENVTAQAYPAMLVIAGYNDSRVQYWEAAKWVAKLRATKTDDNPLLLKTELGAGHGGMSGRYQGLRDVALEYAFIFKVLQIAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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