Pseudomonas stutzeri T13, B319_RS0118925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri T13 contig000065, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAGTGGATGTTCTCGACTGAACCACTGCTGGCGCGCGGAAAAATGTAGTGGCCTAAAAAAAACACTACAAAACCGTTGACGATGAAAAAACAGCGGCGC ATTATTGGCCCGCTCCCGCTAACCAGGGGCCCTGGCAAGGGTCTCCGGGGCGTGCTCCAGCCAACCAGCCGAGCCGTTCCGTGACTGTACTGCCCACAAG GCGGACTGACGAGGTTGCGACTGGAACGAGTCGTCCCGAGGGACGGGGTAGCGATTGACGCATCAGCCAGTCTGACCAGCTTCTCGTTGTTGTAGCGCAC ACGGCAGCCACGCCGGCTGTGGGCGCAGCAACCGGAACCAGCCAGCCCGGCGGTCGTATCCCCCTTCTCCTTGGTTCAATCCTCGTCCCGGTCGATATTT CGACGCTCTGCCGCGTGTTGCCCGCACTGATCAGCGATAGCACGTAGGTTCGGTGGGAAAAAGTCGGTGCTCAACCACACTTATTTTTGAAGGATTGAAC
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| DNA Sequence for Gene |
>B319_RS0118925
ATGTCCGCATATCAAGACGACATCAAGGCAGTTGCCGCCCTGAAAGAGCAATACGGCAGCAGCTGGGCCGCCATCAACCCTGAGTCCGTCGCTCGCATGC GCGCCCAGAACCGCTTCAAGACCGGTCTGGAAATCGCTCAGTACACCGCCGACATCATGCGCAAGGACATGGCCGAGTACGACGCCGACTCGTCCGTCTA CACGCAGTCCCTCGGCTGCTGGCACGGCTTCATTGGTCAGCAGAAGCTGATCTCCATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTTGCTGCTCTGCGTTCCGAGTTCGGCCCGCTGCCGGACCAGTCCATGCACGAGAAGACCGCCGTTTCCGACCTGATCGAGGAGCTGT ACACCTTCCTGCGTCAGGCTGACAGCCGCGAACTGGACCTGCTGTTCACCGCCCTGGACGCTGCTCGTGAAGCTGGCGACAACGCCAAGGCTGCCGAGAT CCAGAACCAGATCGACAACTACGAAACCCACATCGTACCGATCATCGCCGACATCGACGCTGGCTTCGGTAACCCGGAAGCTACCTACCTGCTGGCCAAG CGCATGATCGAAGCAGGCGCTTGCTGCATCCAGATCGAGAACCAGGTTTCCGACGAGAAGCAGTGCGGCCACCAGGACGGTAAAGTAACCGTTCCGCACG CCGACTTCCTCGCCAAGATCGCTGCCGTTCGTTACGCCTTCCTCGAGCTGGGCATCGACAACGGCGTGATCGTTGCTCGTACCGACTCCCTGGGTGCCGG CCTGACCAAGCAGATCGCCGTGACCAAAGAGCCGGGCGACCTGGGCGACCTGTACAACTCTTTCCTGGATTGCGAAGAAATCTCCGAAGCCGAGCTGGGC AATGGCGACGTCGTAATCAAGCGCGAAGGCAAGCTGCTGCGTCCGAAGCGTCTGCCGTCCAACCTGTTCCAGTTCCGCGCTGGCACCGGCGAAGACCGCT GCGTTCTGGACTGCATCACCTCGCTGCAGAACGGCGCTGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAGGCCATGGTTGACCG CATCCGCGAAGTCATCCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCCTTCAACTGGACGCTGAACTTCCGTCAGCAGGTGTTCGACGCTTTCGTT GCCGAAGGCAAGGACGTGTCCGCCTACGACCGCGCCAAGCTGATGAGCGTCGAGTACGACGAAACCGAGCTGGCCCAGGTTGCAGACGAGAAGATCCGTA CTTTCCAGCGCGACGGTTCGGCTCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACTGCTGCTCTGTCGACCGACAACCTGGCCAA GGGCTACTTTGCCGACCAGGGCATGCTGGCCTACGTTAAGGGCGTTCAGCGCGAGGAACTGCGTCAGGGTATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCTGACATCGGCGACAACCACAAGGAGTACTTCGCTGGCGAAGCTGCTCTGAAGGCAAGCGGCAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACAGGTTCGCAGCCGCCCCGGCTGCGGTGTGAAAAAAGCCCTGGCGTGAGCCGGGGCTTTTTTTTGCGACGGATTGAGTGGTGCACGGTTACGCTTCG TCGGCCAGCGCTCCACTGTCATTCTCTTGTCGCATACGAACCTTAGCGTCATGGCTCCGACAACAATCGTTATGGAGCTGCGCCGTGATTACTGAGAACA ACGACATTCTGTTCGGCAACGGGGACGAGTTGCCCAGTAACCATTCGACGAATCCGCATATCCAGGATGTGATTTCCCTTGGCCGACGTAAAGTGCTCGC GGGTGGCGCAGCCATGGGTGCCCTGGCCTTTCTTGGCGCATCCCTTCCCGGCCTCGCGCAAGCGGCGGAGCCAATGTCCCGCGGGATCAAAGATGTTCCG TTCAAACGTCGTACCCGCCTGCCGTTCGTGCCGGTGGCCGTTACCCGTGCCGACACCATAACCGTGCCGTCAGGCTATACCGCCACCACCTTCATCCCTT
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQDDIKAVAALKEQYGSSWAAINPESVARMRAQNRFKTGLEIAQYTADIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSEFGPLPDQSMHEKTAVSDLIEELYTFLRQADSRELDLLFTALDAAREAGDNAKAAEIQNQIDNYETHIVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKIAAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDLYNSFLDCEEISEAELG NGDVVIKREGKLLRPKRLPSNLFQFRAGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQREELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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