Pseudomonas stutzeri T13, B319_RS0108435 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri T13 contig000016, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGATATGTCCATTGAGCGGATTAAGTCGCCCGGGCGCTCTAGCTAGCCTTTTCAGACCAGTGCCGCTTATCGGAACCCGTCGGGCGGACCGGTCGCCG CCCTCCTGAACTCATACCAGCGGGGGATGACCAAATTAAGTAACAGCCACTACCCAGCCTACGCGGAGACCCCACATGAAAAGACTGCTGCTCAGCGCAA TGCTCAGTGCAATGGTTGCGGCGCCTGCGATGGCGCAGTTTCCCGCCGGCACTCCGCGTGACGATACCGGGTCACGTCCGAGCCCGATGGGCAACCCCAC GCCGCAGGAAGAAGTGGAAACCCGCAAGGATCACAAGGGCCGTACCGTGACCGAAGACGGCCAGCTGGTGGCACCACAGTCGGGTAGCGAGGAACCTTCA ACCAATCCGGACCGGCATTCGGCGCCGGGCGGCCCCAACGACACTTCCACCGACGCCGGCAAGCTGGAATAGCCGCCGGCATAGCTCGCGGAGGGTGGCC
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| DNA Sequence for Gene |
>B319_RS0108435
|ligD
ATGGCGCTCGAAGATTACCAACGCATGCGTGACTTCGCCGCCACGCCGGAACCCGCCGGCAAGGCACGGCCGAAGTCCCGCAAGAGCCAGGCGCTGCAGT ACTGCATCCAGAAGCACGACGCCACGCGTCTGCATTACGACTTCCGCCTGGAACTGGACGGCACCCTGAAGAGCTGGGCGATTCCCAAGGGGCCAAGCCT GGACCCCGGCGTGCGCCGGCTGGCCGTACACGTGGAAGACCACCCGCTGGAGTACGCCACCTTTGAAGGGAACATCCCCGAAGGGCATTACGGTGCCGGC GACGTGATCGTCTGGGACCGTGGCGTGTGGACACCCCAGGGCGACCCGCAGGAGGGCTATCGCAAGGGCAAGCTCAAGTTCAGCCTGGAAGGCGAGAAGC TTGCCGGCAGCTGGAACCTGGTGCGCACGCAGATGGACGGGAAGAAGGAGCAGTGGTTCCTCATCAAATCCCGTGACGAGGCGGCGCGCGAGGAGAGCGA GTACGACATCGTCACCGCCGAGCCCGACAGCGTGCTCAGTGACCGCACCCTGGTGCCGCGCAAGCGCGGCGCGAAGGCCCGCGTGGCCGAAACGCCGCCT GCGCCAGTCAAGACACCCACCAAGAAGCGGACACCGGCCAGGCGAAAGGCAAAGGTCGCGCTCGAGGGGGCGGTTCCGGCCGAGCTACCGGAGCATTTCA AACCGCAGCTGGCCACCCTGGTCGATACGGTACCGGGGGGGGACTGGCGGTACGAAATCAAGTTCGACGGCTACCGGATGCTCGCGCGCATCGACGCCGG CGAGGTCAGGCTGTTTACCCGCAACGGCCACGACTGGACGGCGAAGATGCCCCAGCAGGCCGCGGCGCTTGCGGGACTCGGGCTCGAGTCCGGGTGGCTG GATGGCGAGGTGGTGGTGCCGAACGAGGAGGGCACGCCGGACTTCCAGGCCTTGCAGAACGCTTTCGAGGCGGGGCGCAGCGGCAGCATTCTCTATTATC TGTTCGACATGCCTTACCTGAACGGCATGGACCTGCGCGAGGTAGCGCTGGAGCAGCGCCGCGCAGCGCTGCGCGAGGTGCTGGAGCGCAGTGACAGCGA GCTGCTGCGCTTCTCCGAGGACTTCACCGAGCAGCCGGACAGCATTCTGGAAAGCGCCTGCCAGATGAAACTCGAAGGGCTGATCGGCAAGCGCGCTGGC AGCACCTACACCTCGCGACGCAGCAGCAGCTGGGTGAAGATCAAATGCAGCAACCGGCAGGAATTCATCATCGTCGGCTATACCCAGCCAAAGGGTACCC GCACCGGTTTCGGCGCGCTTCTGCTCGGCCTGCACGACGACAAGGGCGAGCTGCGTTACGCCGGCAAGGTCGGCACCGGCTTCAACCATGCAACGCTGCA GAGCCTGCACAAGAAGCTGAAGAAGCTGGAAATCGATAAAAGCCCGCTGGCCAAGGCACCCCCAGCAGCCGATGCACGTGGCGCGCAGTGGCTCAAGCCG GAACTGATGTGCGAAGTCGCCTATGCCGAAATGACCCGCCAGGGTGTGGTGCGCCACTCGGTGTTCCACGGCCTGCGAACCGACAAGCCGGCCGAGGCCA TCACCCACGAGCGGGCCAAACCAGTCGCCAGGGCAAAGCCGAACGTCGCCGGCAAGGCCGATCCCCTCGGCAGCGGTCGGATCAAGATTTCCAACCCCGA ACGGGTCATCGACCCCAGCAGCGGCATCACCAAGATCGAACTGGCCCGCTTCTACGCGCAGATCGCCCCCTGGGCGCTGCCGCAATTGCAGAACCGGCCG CTGGCGCTGGTCCGCGCGCCTGAAGGCATCACTGGCGAGCTGTTCTTCCAGAAGCACGCCGACAAGCTGGCCATCCCGCATATCACCCAACTGGACCCGG CGCTCGATCCCAAGCACGGCGCGCTGCTGGTGATCGACAGCGCCGAGGCGCTGGTCGGCGCCGCGCAGATGGGCACTATCGAGCTGCACAGCTGGAACGC CGTAGCGCCCGATCTGGAGCACCCTGACCGCTTCGTGCTGGACCTCGACCCCGATCCGGCCCTGCCGTGGAAGCGCATGCTCGAGGCGACCCAGCTGACC CAGACGCTGCTGGACGAGATCGGCCTGGCATCGTTTCTCAAGACCAGCGGCGGCAAAGGGCTGCACATCGTCGTACCGCTCGACCCCGTGCATGACTGGA GCGAGGTGAAATCCTTCAGTCAGGCGATTGCCAGGCACCTGGCAAAACTCCTGCCGTCCCATTTCTCCGCGGTCAGCGGGCCGAAGAACCGGGTCGGGCG CATCTTCATCGACTATCTGCGCAACAGCCGTGGCGCCAGCACCGTCGCGCCGTACTCGGTACGCGCCCGCGAGGGTCTGCCGGTTTCCGTACCCATCCAC CGCGACGAGCTGGCGGACCTCAAGGGCGCCAACCTGTGGACGGTGCGCAACCTGCTGGAACGCCTGCAGGAACTCGGTGACGACGACCCCTGGGCGGCCA TCGGCAAGACCCGCCAGCGCCTGACCAAAAAAATTCGCGACCGCCTGAACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGGCGACTGGGCCCGCATCGGCATTCCGCCAGTGCGCACGCAACTATCAGAGGAGGCAGCATGAGTGACATGACAGTCGGAGATTACCTGGTCGAGCG GCTTTACCAGTGGGGCGTGCGGCGCATCTATGGTTATCCCGGCGACGGCATCAACGGCGTGCTCGGTGCGCTGAACCGGGCGGGCGGCAAGATTCGCTTC ATCCAGGCTCGGCACGAGGAGATGGCCGCCTTCATGGCATCGGCCGATGCCAAGTTCGGCGGTGGGTTGGGTGTCTGCCTGTCCACGTCGGGGCCGGGCG CCTCACACCTGCTGACCGGGCTGTACGACGCGCGTCTGGATCATGTGCCGGTGCTCGCGATCGCCGGGCAGCAGGCCCGCACCGCGCTGGGCGCGCACTA TCAGCAGGAGATCGACCTGCCGGCGATGTTCAAGGATGTCGCGGGCGCCTTCGTCCAGCAGGCCAGCGCGCCGGCACAGGTACGCCACCTGGTGGATCGA
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MALEDYQRMRDFAATPEPAGKARPKSRKSQALQYCIQKHDATRLHYDFRLELDGTLKSWAIPKGPSLDPGVRRLAVHVEDHPLEYATFEGNIPEGHYGAG DVIVWDRGVWTPQGDPQEGYRKGKLKFSLEGEKLAGSWNLVRTQMDGKKEQWFLIKSRDEAAREESEYDIVTAEPDSVLSDRTLVPRKRGAKARVAETPP APVKTPTKKRTPARRKAKVALEGAVPAELPEHFKPQLATLVDTVPGGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWL DGEVVVPNEEGTPDFQALQNAFEAGRSGSILYYLFDMPYLNGMDLREVALEQRRAALREVLERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAG STYTSRRSSSWVKIKCSNRQEFIIVGYTQPKGTRTGFGALLLGLHDDKGELRYAGKVGTGFNHATLQSLHKKLKKLEIDKSPLAKAPPAADARGAQWLKP ELMCEVAYAEMTRQGVVRHSVFHGLRTDKPAEAITHERAKPVARAKPNVAGKADPLGSGRIKISNPERVIDPSSGITKIELARFYAQIAPWALPQLQNRP LALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGTIELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLT QTLLDEIGLASFLKTSGGKGLHIVVPLDPVHDWSEVKSFSQAIARHLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGASTVAPYSVRAREGLPVSVPIH RDELADLKGANLWTVRNLLERLQELGDDDPWAAIGKTRQRLTKKIRDRLNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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