Strain | Pseudomonas stutzeri T13 contig000008, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CACGCTGCTGATCGCCGCGCTGGCGGGCTATGCGCTGTATCTCTGGCGCCGTGTCTGGCGCAATGAACGGCAGCAAGCCGAGCTGAAGGAAAAACAGCAG ACGGCGCTGGCGGAGGATCTGCGGATTCTCGCCAGCTGTCTGCTGGACGAGCAGCTGCCGCTCATCGAGGGCGCCATCCGCATCAAGGTGCTGCTCGACA ATTACGACGCCGAGCTCGGGCAACATCCGCGCTGTCAGGTGTTCCAGCAGTTGTTCGAGGCCACCGAACAGGTGCCGACCCATGCCGCCTGGAAGGCCCT GGACAAGAGCGAGCGCCGTCGCCACGAAGCGCAGTTCAGCGCGCTGGAACTGCGGCACAAGGCAGAGGCGCGCCGCTCGGCCCGTTGGCTGCTCGACGAG GCTCTGCCAAAATCGCGCGACGCGGCCTGACCGACCTTCTTCGCCGTACGCCCTCTAATCTGTTAGCCCCATCCTCGCCAAGCCCGCACAGGAGTCTTCG
|
|
DNA Sequence for Gene |
>B319_RS0104910
ATGTCTCTGCGTCTGCCGTACGCCCTGGTTCGCCTGACGCTGGGGGCCGCGCTCGGCCTGGCCGGCCTCGGCGGTTGTCAGGCCTATCTCGATAACCGCT ACAGCGCCAGTCTGCCGCCGGCACAGGGCATTCAACCGCTGACCGGACTGGCGGGCAGTGCGAGCATCCGGCGCAATTCCATGGGCATGCCGCTGATCGA AACCTCGTCGTTTCACGATGCGCTGTTTGCCATGGGATACGTCCACGCCACCGATCGACTGAGCCAGATGGTCAGCCTTCGGTTGATGGCCCAGGGCCGC CTGGCGGAAATGGTCGGCCCGGGCGTGCTGGAGACCGACCGTTTCATGCGGGCGGTCAATCTGCGCCAGAGCGCCGAGCTGCTGTACCGTGAATCCTCGC CGAGGATGAAAAAGTTCTTCGAGGTGTACGCCCGTGGCGTGAACGCCTACCTGTATCGTCATCGCGACAAGCTGCCGATGGACCTCGCCGAGTCCGGCTA CAAACCGGAGTACTGGAAGCCCGAGGATTCGGTGCTGGTGTTCTGTCTGCTCAATTTCGGCCTTTCGCAGAACCTGCAGGAAGAGGTCGCCGCGTTGCTG ATGGCGCAGAAAGTGGGCAGCGACAAGCTGGCCTGGCTGTTGCCCATCTACCCGGACGAGGTGCTGCCGTTCGACGAGGCGGACAAGCTCAAGGGCTTGA AGCTGGGTGGCAATGTGCCCGGGCTGGCGGCACTCGAACGTGCCACACAGCCGCTGGCGGCTCTGACGCCGGCCGGCATGGCGGCTTCCAACAACTGGGC CATCGCCGGCAGCAACACACGCAGCGGCAAGCCGATCCTGGCCAACGACACGCACCTGCCGCTGTCGATGCCCTCGTACTGGAATTTCATGCAGATCCGC GCACCGAAGTTCCAGGCGGCGGGTGTCACCATCGCAGGCGTCCCCGCCGTGGTGGCGGGCTTCAACGGCAAGCTCGGCTGGGGCATGACCATGGTCATGG GCGACAACCAGGACCTCTATCTCGAGCAGGTGCGTCGCGAAGGCTCGCGGCTGATGTACCTGGCCGACGGCAAATGGCTGCCGGCCCGCGAGCGCCACGA GACCTACTTCGTCAAGGGCGAGCGGCCGATCCGCGAGACCATTTTCGAGACCCGCAACGGCCCGCTGCTCAACAGCGTACTCGGCGAGCGCAAGCACCCG CTGCAACCGTTGCAGCTCGGTAGTGGCTACGGCCTGGCACTGAAGACCACGCAGCTGGAAGCCGATCGCACGCTGGACGCCTTCTTCGACCTGTCCCGCG CGCAGTCGGTGGACCAGGCCTTCGAGGCGACCCGGGAGATTCGCGCCGCCGCGCTCAATCTGGTCTTCGCCGACCAGCAGGGCATTGGCTGGCAGGTGAC CGGGCGCTTCCCCAACCGTCGCGAGGGGCTGGGGCTGGTGCCGTCGCCGGGCTGGGACGGTCGCTACGACTGGGATGGCTATGCCGACCCGATGCTGCAT CCCTACGACCAGGACCCGCTCCAGGGCTGGCTAGGCACCGCCAACCAGCGCAGCGTGCCGCGCGGCTATGGCATGCAGCTGTCCAGCTCCTGGTACGGCC CGGAGCGCTACGAGCGACTGGCGGAGCTGGCCGGGCGGGGCAAGCATGACACCCGCAGCACCATCGCCATGCAGTACGACCAGGTCACGCCGTTCGCCGC CAAGCTCAGGACGATGTTCGAGGCGCCGGGCATGGCCGGGCCGCTGCGCCAGGCGATCGATGCCCTGCCGGCCGCCGAACGCAGCAAGGCGCGCGAGGCG CTGGATCGGTTGCTCGCCTTCGATGGCAAGCTCGCGGCCGATTCGGCCAACGCCGCTCTGTATGGCGCCTTCCTGCACGAGAGTGCGCGGCACATCTTCC TCGACGAACTGGGGCCTGAGGACTCGCCGGCCTGGCGTGCGCTGGTACAGACCGCCAACACTTCCTATTCGGCCCAGGCGGACCATCTGCTCGGCCGCGA AGACAGCCCGTTCTGGAACGATCAGCGCACCGCGCAGAGCGAAGACAAACCGGCGATCCTGGCGCGCAGCCTGGCCGCTGCGGTGAGTTTGCTGGAAACC CGTCTGGGCAACGAGCGCAGCGCCTGGCAATGGGGCAAGCTGCATACCGCTCGCTGGACCTCCGGCGCGACGCAGCTGGCACCGCACATGCCGGCCGGCC AGCGCAGCAGAATCCACGCCATCGGCAACTACCTCGATCGTGGTCCCTATGCCATGGGCGGCGATCACAGCACGCTGAATGCCTCGGCCTATCACCTGGG CACGGACTTCGATACCTGGCTGATCCCGGCAATGCGCATCATCGTCGACTTCGGACTGGACGAACCGATGATCGGGCTGAACAGTTCGGGCCAATCCGGC AACCCGGCCAGCCCGCACTACGCCGACGGCATCGAGGCGTGGCTGAAGGCGCAGTACCTGAGCTTCCCGTTCAAGACGGAAAATCTCGACAAGGTCTATG GCACGCAGCGTCTGTTGCTGACCCCGGCCGGCAAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GGTCGCCCCGCGCCGGCTTCAGGTCGGTCGCGGCGTCGCGGGTATCACCTCGAGCACGCGGATCGTGTCCGGCGCAGGGTAGTGCCAGCGCACGTCGACA TCCCAGAACTGCGCGCCGTAGCGCCGCTCGGGCTCCGGCTTCTGGTATGCGGGGCGCGGGTCCTGTGCCAGGCATTGCTCGATGAGTTCCAGCAGTGGCT CGCCGAGGCGCAGCGCTTCGCGGTGGGCCTGCAGCAACCCGCTTTCCGTCCACTGCACCTCGATCAGTGTCGGCGCGTCCGCAGCCATGTCGTTGCGCGC ATCCGGCAGGGCATCGGCGTAGGGGACATAGGGCTTGATGTCCAGCACCGGCGTGCCATCCAGCAGGTCGATGCCGGAGATGAACAGCCGATCCGCTTCG ACGCGATCCAGCCTGACCACCGATTGACCGATTCCGTTGGGGCGATGCGTCGCGCGGGTGGCGAACACGCCGACCATGCGATTGCCGCCCAGGCGCGGCG
|
|
Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MSLRLPYALVRLTLGAALGLAGLGGCQAYLDNRYSASLPPAQGIQPLTGLAGSASIRRNSMGMPLIETSSFHDALFAMGYVHATDRLSQMVSLRLMAQGR LAEMVGPGVLETDRFMRAVNLRQSAELLYRESSPRMKKFFEVYARGVNAYLYRHRDKLPMDLAESGYKPEYWKPEDSVLVFCLLNFGLSQNLQEEVAALL MAQKVGSDKLAWLLPIYPDEVLPFDEADKLKGLKLGGNVPGLAALERATQPLAALTPAGMAASNNWAIAGSNTRSGKPILANDTHLPLSMPSYWNFMQIR APKFQAAGVTIAGVPAVVAGFNGKLGWGMTMVMGDNQDLYLEQVRREGSRLMYLADGKWLPARERHETYFVKGERPIRETIFETRNGPLLNSVLGERKHP LQPLQLGSGYGLALKTTQLEADRTLDAFFDLSRAQSVDQAFEATREIRAAALNLVFADQQGIGWQVTGRFPNRREGLGLVPSPGWDGRYDWDGYADPMLH PYDQDPLQGWLGTANQRSVPRGYGMQLSSSWYGPERYERLAELAGRGKHDTRSTIAMQYDQVTPFAAKLRTMFEAPGMAGPLRQAIDALPAAERSKAREA LDRLLAFDGKLAADSANAALYGAFLHESARHIFLDELGPEDSPAWRALVQTANTSYSAQADHLLGREDSPFWNDQRTAQSEDKPAILARSLAAAVSLLET RLGNERSAWQWGKLHTARWTSGATQLAPHMPAGQRSRIHAIGNYLDRGPYAMGGDHSTLNASAYHLGTDFDTWLIPAMRIIVDFGLDEPMIGLNSSGQSG NPASPHYADGIEAWLKAQYLSFPFKTENLDKVYGTQRLLLTPAGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|