Pseudomonas veronii 1YdBTEX2, H736_RS0130235

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas veronii 1YdBTEX2 Contig63, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCCCTTGGCATCACGCTCCAGTTGTAGAAATTGCGCGTCATATTCCATGTCTTCGCCGCATGGCGAAGTCGCGGAAACGGCGGCGAGCAGCAACGGCAC ATCCACTGAAATCGATCTCCCTATCGGCCCGTTAGATGACGGGCAATTCATGCATTAGTTGCGTGATGAACTTTGCATGTTTTCTTGGTCATATACATGT GGCGCCACTAATGTGCCATCACTGGTATTCAAGAAGTTGTGCATTTTTGGTGTAGTAGTTGTGGCTTGTCAAGGTAAGCTATTCGCCCTCTGTGACAGAT GTGCGGTACTTAACAACCTGCGCGACTGGTGAGTCGAGTGGTGTTCCACGACAGGGTTTTTGTCATTGAGGCCAGTTAAGATCTGCGATCATGCTGGCAA AAAGCAGATTATGACCGTGGTTCGCGTCGCCTGGCGCGATCTCTCGGGAAAGGCGCTCGCCGGGAATCGATTGCGCGCGAAGTATCAGCAAGGAGGCAAG
DNA Sequence for Gene
>H736_RS0130235
ATGTCGCTGTGTTTGACTATCACTAGTTATCACAAGATTACCCCTGGGCAGTGTGCCGAAAAGTCCTTGAACAAGGGCTCGATAGCTATCGGCCGCAGCT CGGATAATGACTGGGTATTGCCTGATCCCGAGCGTCTGGTGTCCTCGAAACATTGCGTAATTCAATACAAAGATGGTCGTTATTATTTAACCGATAACAG TACAAACGGTGTGGAGTTGGTTAACGCCGGCATCCGTCTGCGCCGGGGTAATAGCGAGCCGTTGCAGGATGGCGAGCTGATCCGCATCGGTGATTACGAA ATCCAGGCGCGCATCGATTTCAACGTACAGGCTGCGGATAGCCAGGCGTTTGCCGGGGATTCCCCGAACAGTTTTGAAGCGCTGATGGGCGCCGTCGCCA GCAAGCCGGTAGCCACGCCAGTGATCGCGCCGCAGTTCCAGGGCGCGTCGTCGATGGACACCTTGCCGGACCTCTTCGATTTTCTCAGCCCGACCGCCGT GCCGCCGCCGACCGTGGCCGATCATGTGCCGTCCGAGCAACACGACTTCCGCCCGCCGACCCCGGTGGCCGTGCCGGTGCCGGTGGTCGAGCCGCCAGCC GCGTCGGGCTCGGTCATTCCCGAGGATTGGGACCTGTTTGGCGACACACCGGCGCCGGTGGTCAGCGCACCGCCACCGCCTGCGCCGGTGATCGCGCCGC CACCTGTGGTCGAGCCTGTGCTCCCGGCGGCCGCCGCCCAGCAACCCGATCTTTTGCACGCCTTCCTGCGCGGCGCCGGCCTGGACCCATTGCGCCTGGA CAAGGCCCAGGCCGAAGCCCAGATGGAAAGCATCGGCCGCAGCTACCGGCTGATGGTCGAAGGCCTGATCGACGTGTTGCGTGCCCGCGCCAGCCTCAAG GGCGAATTCCGCATGCAGCAGACGATGATCCAGCCCGCGGAAAACAATCCGTTGAAATTCGCCCCGAATGCCGACGAAGCGCTACAGCTGCTGCTGCGTC ATGGCAACCAAGCGTTTATGGCACCGGACATCGCAGTGCGCGACAGTTTCGACGACCTGCGCGCTCACCAATTGGCGGTGATGGCCGGTGTGGAAGCGGC AATCAAACACCTGCTCAGCCGCTTCGAACCGGCGCAGCTGGAAGAACGCATGGGCAAGCCCGGCGGGCTGTCGAGCCTGTTCAGCGGCTCGCGCCAGGCC CAGTACTGGCAGCAGTTCACCGAGCTTTACAGCAATATTTCCCGCGAGGCCCAGGAAGATTTCCAGGACCTGTTCGGCCGCGAATTCAGCCGAGCCTACG AAGAGCACAGCGCACGCCAGCGTCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGCAACACATGGATAAAACGGAAAGCTAAGTACGTCATTGAGGACGAAGGATGATTCCCAGGTTTTTACTCGCAGTGGCCAGCCTGCTGATGCTGGCG GCATGTACCAAGGATGTCGCCGAACCCCAGGCCAGCGCCGCCGAGGTTGAAGCGAACAGCGCTGCCGTCGAGCTGCACTTTCACGCGATTGCCGGGCTCA ACCCCGGCGCCAACGGCCAGGCCGCCCCGGTGCGCGTGCGGATTTTCGAACTGAAAAACGCCGCCACCTTCGGCCGTTCGGATTACTTCGCCCTGGCTGA CCATGCGCAATCCACCCTCGGCCTCGACCTGCTGGACCAGGACGAAGTGATGGTGCAGCCCGGCCAGCAGTTGAGCATCCAGCGCGACCTCGACCCGTCC ACCCGCCAGATCGGCCTGTTGGTGGGCTACCGCGAGCTGGACCGCGCGCAATGGCGCACGGTGCTCAACGTGCCGCCGCGCCAATACACCGAATACCAGA
Amino Acid Sequence
>type VI secretion protein
MSLCLTITSYHKITPGQCAEKSLNKGSIAIGRSSDNDWVLPDPERLVSSKHCVIQYKDGRYYLTDNSTNGVELVNAGIRLRRGNSEPLQDGELIRIGDYE IQARIDFNVQAADSQAFAGDSPNSFEALMGAVASKPVATPVIAPQFQGASSMDTLPDLFDFLSPTAVPPPTVADHVPSEQHDFRPPTPVAVPVPVVEPPA ASGSVIPEDWDLFGDTPAPVVSAPPPPAPVIAPPPVVEPVLPAAAAQQPDLLHAFLRGAGLDPLRLDKAQAEAQMESIGRSYRLMVEGLIDVLRARASLK GEFRMQQTMIQPAENNPLKFAPNADEALQLLLRHGNQAFMAPDIAVRDSFDDLRAHQLAVMAGVEAAIKHLLSRFEPAQLEERMGKPGGLSSLFSGSRQA QYWQQFTELYSNISREAQEDFQDLFGREFSRAYEEHSARQRR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site