Pseudomonas veronii 1YdBTEX2, H736_RS0130185

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas veronii 1YdBTEX2 Contig63, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCAACCTCACCGATGTGGAGCCGCTGCGGGTGTTTTTCGCCGGGCAGAATCTGTTGGTGGCGACCCAGGCATTGAGCATCGCCCAGGTGCAGTCGTTG AGCCGCAACCTGTCGATCGTGTTCTGGATCATCGCCGGGTTGGCCTTGGCGGGGGCGTTCGCGGCGATCTTCGCCGGGGCGCTGGCCGCCGTGGCGCGCA AGCGCAGGGAGTTGTCGGTGTTGCGTCTGTTGGGCTTTTCCACCGCCGCGCTGTTGCTGTTTGTGGTGCTGCAGGCGCTCTACAGCGCCGGCTTGGCCGC CGTGTTCAGTGCGGGTCTGTATGGCCTGGCCGAGGCGGGCTTGAATCAATTATTCGTGCAGGTGCCGGGCGAACACGCCAGCCACCTGCTGGCGCGTCAT TACGGCCTGGCCCTGGTGGCTGTGCTCGGCGTCAGCGCCGTGGCGGCAGCGTGTGGCGGTTGGCGCGTGGCGCGTATCCAGGCTTCTGAAGGAATCCGAG
DNA Sequence for Gene
>H736_RS0130185
ATGTATAAGTTACTGGGCGCCGCCTTGGCGCTGAGCCTGGCCTCACTGGCGTGGGCCGATGAGGCAAGCGATAAGCTCGACAACCCCAAGCCGTTGCCGG ACGACGTCAGCCTGCCGCTGCCGTGCGAAGGCAACATGGTGTTCCGCTACGTCTATGTGCTGGCCCAAGGCACGTTGGACGACCGCGAGATCAGCCTCGG CTACCCCTTTGCCGAAGGCGAGGCGGGCTATCAGCAGTCGTTCATTTCCGGTTATCGCCGCGACTTCATCAACGGCCAGTTCAGCCTCAAGGACCTGCCG AAAGACTGGAACAACGTCATCACGCCCTTGATGCCGAAGACCGACGCGAAGACCCCGCTCAAGCCGATGCTCTACTTCATCGGCAAGTACGAAGTGACCG CGCGCCAATACGCTCTGGTGATGTCCCAGGCGCAATCGCTGGCCAGTGGCGAACCGGCGCCCGCGTGCGATGCGCCCAGCGGCATGGCCGGGCGTTTGCC CAAGGTCAAGCTGTCGCGCTTTGAAGCCGAACGCTTCTCGGCGGTGTACAGCGCCTGGCTGATGAAATACCACCGCGAGTTGCTGCCGGTGAGCGGGCGT GGTGCTTCGGCGGACGACGGCGGCCTGGGTTTTGTGCGCCTGCCCACCGAAGTGGAATGGGAGTTCGCCGCACGCGGGGCCCAGGCCGTGAGCCGCCAGG ACTTGGAAGGGCGCCTGTTCCCGCGGCGCATCGAAGGCAGCGAAAGCGACGGCCCGCTGGCCGATTGGGCGGTGTTCAACCAAGTCGCCGGCGGCACCGG CCAGGCCGCGCGGCTGCTGCCCATCGGCACCAAATTACCCAACCCGATCGGCCTGTTCGATGTGATCGGCAACGCGGCGGAAATGGTTCAGGAATCCTTC CAACTGGTACACGCCGGGCGTCGCCAGGGCGCCTATGGCGGCTTTGTGGTCAAGGGCGGCAATTACCTGGAGGGCGAGGGCACGCTGTTCACCGGCATGC GCCGCGAGTACCCGTTGTTCGCCGCCGACGGCACCGAGCAAAGCAACGAGACCACCGGTTTTCGCGTGGCGATCGGCGCGCTGTCGGCACCGCGTTCGCG CTACAAGGAGCTGTTCGCGCAGTGGCAGAAAGAAGGCCGCCTGGCCTCGCTGACCGATGCCATCGATGACGCCCAGGACCCGACCAAGCGCCTGGACAGC ATCATCGCTGCCAGCGTCGACCCACGCCTGCAAGCCGAGCTGGGGCTGGTCAACGAAGAGCTCAAGCGCAACGTCTCGCTGATCGCCCAGCAACGCGAAG AAGCGGCGGGCAACCTGATTCAGTCGGCGGCGTTGGTGGCCGAGACCATCAATAACTACAACATCCGCCTGACCAATCTGCAGAAGAGCCGCCAGCAGGC CGTGGACGCCAAGGACGAGGCCAGCGCGCAGCTGTTTGCCGCAGCCATTGCCAACGGGCGCAGCGCCCTCGACGGCGCAGTGGCGATCTATATCGACAAC CTGGCCACCGGCACGCGTTACACCGATGCGGTGATCCAGGCGCAGTTTCAACGGATCAAGGAAGAGTTGGATCGCAAGCCAGTGCTCGGCAAAAGCCTGG TGACGCGCGCGACACTGTTCGTTCGCCATGTCGGCAACTACCGCAAGCAACAGCGGGCCGACCCGGCAACGATCTTGAAGGAATTGCTCGCAGCCAGTGG TCAGCGGTCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGTTGGCTATAGAGCGAGCTTGGAAGGGACTCAGGCGGCGGTGGGCCGTGCTGGGCAAGTCAAACTTAAAAGAGAACACACCTATGCTTTTTCCCCGTA AGGCGGTTTCCAAGCGTCACTTGCTGCTGATCGCAGCCGGTTTCAGCACCGTGTTGACTGGTTGCGCCACGTCGCCGACGTCCAAAGTCGCGTCGAGCAC CAAGGTCGAGTATTACCCGAACTGCTACGAGCCGGTGCAGCACCTGCGCGCGACCGATTCGGACATGACCAAGTCGGTCGTCACCGGCGCGGCCATTGGC GCTGCCGGCGGTGCATTGCTCGGCGCCCTGACCGGCGACTCCGAGAAGCGCGGCCGTAACGCCGCAATCGGTGCCGCGGGCGGCGCCCTGGCTGGCGGCG CGGCGGGTTACTACACCGAGCGTCAGAAGCAGATCGCCGATGACAACCAGCGTATTGGCTCCTACGCAGCCGACGTCAATAAAAGCGCCTCCGACATCGA
Amino Acid Sequence
>type VI secretion protein
MYKLLGAALALSLASLAWADEASDKLDNPKPLPDDVSLPLPCEGNMVFRYVYVLAQGTLDDREISLGYPFAEGEAGYQQSFISGYRRDFINGQFSLKDLP KDWNNVITPLMPKTDAKTPLKPMLYFIGKYEVTARQYALVMSQAQSLASGEPAPACDAPSGMAGRLPKVKLSRFEAERFSAVYSAWLMKYHRELLPVSGR GASADDGGLGFVRLPTEVEWEFAARGAQAVSRQDLEGRLFPRRIEGSESDGPLADWAVFNQVAGGTGQAARLLPIGTKLPNPIGLFDVIGNAAEMVQESF QLVHAGRRQGAYGGFVVKGGNYLEGEGTLFTGMRREYPLFAADGTEQSNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPTKRLDS IIAASVDPRLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSAALVAETINNYNIRLTNLQKSRQQAVDAKDEASAQLFAAAIANGRSALDGAVAIYIDN LATGTRYTDAVIQAQFQRIKEELDRKPVLGKSLVTRATLFVRHVGNYRKQQRADPATILKELLAASGQRS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site