Pseudomonas veronii 1YdBTEX2, H736_RS0130145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 237 | 390 | 2.9E-24 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 212 | 646 | 1.1E-74 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 219 | 399 | 1.3E-35 |
| Coils | Coil | Coil | - | - | 208 | 235 | - |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 416 | 647 | 2.09E-52 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 409 | 649 | 6.3E-22 |
| Pfam | PF16448 | LapD/MoxY periplasmic domain | IPR032244 | LapD/MoxY, periplasmic domain | 23 | 145 | 3.3E-37 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 241 | 398 | 2.04E-22 |
| Gene3D | G3DSA:6.20.270.20 | LapD/MoxY periplasmic domain | IPR042461 | LapD/MoxY periplasmic domain, C-terminal | 102 | 151 | 1.0E-19 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 233 | 391 | 8.8E-18 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 237 | 387 | 7.2701E-25 |
| CDD | cd06225 | HAMP | - | - | 174 | 218 | 0.00130657 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 171 | 223 | 1.1E-5 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 417 | 646 | 2.35696E-54 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 168 | 219 | 1.5E-5 |
| Gene3D | G3DSA:3.30.110.200 | - | - | - | 22 | 100 | 4.9E-32 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 225 | 398 | 8.1E-25 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 417 | 644 | 1.2E-52 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 407 | 648 | 7.6E-63 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.