Pseudomonas veronii 1YdBTEX2, H736_RS0128645

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 69 86 4.0E-10
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 50 65 2.5E-11
PANTHER PTHR47918 DNA-BINDING PROTEIN FIS - - 12 105 6.6E-37
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 27 105 2.9E-21
Gene3D G3DSA:1.10.10.60 - - - 12 105 2.5E-26
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 86 106 4.0E-10
PIRSF PIRSF002097 DNA-bp_Fis IPR005412 DNA-binding protein Fis 8 106 1.2E-39
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 34 50 2.5E-11
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 63 103 1.2E-13
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 65 77 2.5E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.