Pseudomonas veronii 1YdBTEX2, H736_RS0118815

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas veronii 1YdBTEX2 Contig25, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGTACCCAGCTCGCCGTACTGGAAGGCGCAGTGAAAGTGGAACTGGCCGAAAACCGCCAAACCGCGCCGCTGATCGTCAACGCCGGGCAGCGCACCGAC TTTTCCTCACAGACCTTTGGAGCGCTGACTGCCGCCGGTCGCTACGTCGGTGCCTGGGCCCAGGGCATGCTGATGGCGGACAAGATGCGCCTGGCGGATT TCGTTGCCGAGCTGGCGCGTTATCGTCGTGGTTTTGTGCGCTGCGATCCGGCCATTGCCGACCTGCGCGTCTCCGGTGCCTTCCCGATCAGCGATACCCA ACGCACCTTGAACATGCTGGTGCAAACCTACCCGGTGCTCGCCACCGGCCATTTGAACGGGTATTGGGTCACGCTGTCGCCCGCCTGACGCCGCGAAGGC AAACCTCGCAAAAAAAAAGCGTTGCCGGGCTGATACTTTTTTTGATCTCAACTGGCAATGAAGGAACAGCCACTTCCTCTCGCCACAGGGCCCCCCATTG
DNA Sequence for Gene
>H736_RS0118815
ATGCCGGTCATTCGCAGCGCGTTGCTCAGCCTGACCCTGATCGGTGCGGCCTGCCCTTTGGCCCGGGCGGACGCGCCGGTGCAGCTGGATTCAGTGACCG TGCGCGCGTACAACCTTGCCCCCGGACCGCTCGGCGCAACCTTGTCGAGCTTTGCCGTGGAGGCCGGCATTGCCTTGTCCTTCGAGCCGTCGATCACTGA AGGGTTGATCAGCCCAAGGCTTTCTGGAAATTACTCGACCCAGGCGGCAGTCGCGCATTTGCTGGCCGGCAGTGGCCTGGACATGCTGCTGCGCAACGAC GGCAGCTACACCTTGGCGCTCCGCAGGGTCACCCTGGCGCAGACCACGATCAGTGGCCACGACCAGCCGGCCGAGACCTTGCCCCCGGTGTATCCGGGGG GCCAGGTGGCCGCGGGAGGACGCCTGGGCATGCTGGGTAATATCGATGTAATGGACGCGCCCTTCAGCGTCAGCACTTACACCTCGTCGCTGATCAAGGA CCAACAGGCAACGACCGTGGGCGACGTGCTGGAGCGCGATTCGTCGGTCCGCGCCACCGGGCAGACCGGCGGGATTGTCGATTCTTTTTTTATCCGTGGG TTTCCGGTCGGCGAAGGCAACCTCGGTGAGCTGGCCTTCGACGGTGTCTATGGCGTGGCCTCCAACTATCGGGTGTTCACCGAATACGCCGAACGCATCG AGGTCGTCAAAGGCCCGAGCGCACTGCTCTACGGCATGTCGCCCAACAGTGCCGTCGGCGGGGTGATCAATGTGGTGCCCAAGCGCTCCCTGGATGAAGA CTTGACGCGGTTCACCGCCAGTTACGCCCAGGATGCGCAACTGGGGAACCATATCGACATCAGCCGGCGCTTTGGCGAGGAACGCCGATGGGGGGTGCGG GTCAACGCCAGTGTCCAGCAAGGCAACACCGTGATCGACGACCAATCGCGCGCCGTCGGGCTCGGCGCCGTGTCCCTGGACTACCGGGGCGATCGCCTGC GAGGCAGCCTGGACCTGATCTCCCAGCAAGAAAAGTTCGATGCGGCATCTCGACCGTTCCTGATCGACACGGGCGTGGAGATGCCTTCCGCCGCCAATGG GCGGACCAATGTGAGCCAAGACTGGGGCTGGTCCGAAACCCGTGATAAATCCGCGTTGCTCAGCGGTGAATACGACCTCACCGACGCCTTGACCGTCTTC GCCCATGCCGGTGGCGGCAGGTCGGCTGTCGCGCGCATGTCCGACCAGACCCCAACCCTCCTCAACGCCGCCGGCGACACCGCCTCGACACCCGGCTATT ACAAGTTCAACGTGCAGCGCTACACCGTCGATGCGGGCACGCGCCTACGCTTCGACACCGGGCCGGTCGGCCACGTCACGGCCCTGCAAGTCTCGCGTTA TCGCGACGAGTTGTCCCGTGGCATCACATCCGGCGCGGTCATCCTGTCGAACATCTACCACCCGATCGATCAGCCCAAGCCTTCGATTGCCGAGCCGGAT ACGCCAAAGGTCTCCGCGACGCAATTATCCGGCATCGCCATCGCCGACACCCTGTCGGTGCTCGAGCAACGCCTGCAGGTCACCTTCGGCCTGCGCAGAC AGCATATTGAGTCGAGCAACTACAACGCCTCCGGTACGCTGAGCACGTCGTATGACGGAGGCAAGACCACGCCGCTGTTCGGGGTGGTGGTCAAACCCTG GGACCATGTGTCGCTCTACTACAACTACCTTGAGGGCCTGAGCAAGGGCGACGTCGCCCCGGCCAACGCCGCCAATGCAGGCCAGATCTTCGCCCCTTAC GTTTCCCGGCAGCAGGAGATCGGGGTCAAGCTCGACTACGGCACGTTCATGTCGACCCTGGCGCTGTTCCAGATCAAGAAGCCCAGCGGCGAGTTGTCGG GCGGGACGTTTTCGGTGCAAGGCGAACAGCGCAATCGGGGCATCGAGCTGAACCTGTTTGGCGAGGTCGCCCCAGGCGCGCGCCTGCTCGGGGGGGTGAC GTTGCTGGATGCGCAGTTGACCAAAACCGGCATTGCCGCCAACCGAGGCAACACCCCGGTCGGCGTGCCGGATGTACAAGCCAACCTCTGGGCCGAATGG GACATCCCCTGGGTCGAGGGGCTGACGTTCACCAGTGGCGCGATCTATACCGCCCGCCAGTACGTCAACCAGGCCAACAGCCAACAACTGGATCCCTGGA CCCGCATCGACCTCGGCGCACGTTACACCACGCGTATCGCACAGCGGCCGACAACGTTCCGCGCCACGGTGCAAAACCTGTTCGATCGCGAGTACTGGTC GGGTGTCGCCTCTTATGGAGCGTTTTCCCAGGGCTCGCCACGCACGCTTTTACTCTCGGCCACGGTCGACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CACCTGCAAAGGCTTTAACCATGGTTACCATCGTTCGACGCAGCCACGCCTTCGCGGCGCTGTTAGTGGCTGGCTTGCTCGGGGCTTCACTGCCCGCCCC CGCCGCCGAGGCGGATACCGCGCGCAGTACCGTCACCGACCTGCTCGGCCGCGAGGTCAAGGTCCATCTGCCGGTCAGGCGGATGATTCTCGGGGAGGGT CGCCAGTTGTACCTGGTCGCCGCCCTGGATACGCAAAACCCCATCGAACGCATCGTCGGCTGGCGCAAGGATCTGATCCAGTCGGACCCGGACACCTACG GAGCCTACCTGCGCAAATTTCCCGCCATTGCCAGGATTCCCACCTTTGGCGGCTTTGAAGACGGGACCTTCGACATCGAACAAGCGATCGCCCAACACCC CGACGTGATCATCCTCAACATCGAGGCACAGCATGCCACCGAGGATGCGCGCTATATCGAGAAGCTCGATGCCCTGGGCATACCGGTGGTGTACGTCGAC
Amino Acid Sequence
>TonB dependent/Ligand-Gated channel TonB
MPVIRSALLSLTLIGAACPLARADAPVQLDSVTVRAYNLAPGPLGATLSSFAVEAGIALSFEPSITEGLISPRLSGNYSTQAAVAHLLAGSGLDMLLRND GSYTLALRRVTLAQTTISGHDQPAETLPPVYPGGQVAAGGRLGMLGNIDVMDAPFSVSTYTSSLIKDQQATTVGDVLERDSSVRATGQTGGIVDSFFIRG FPVGEGNLGELAFDGVYGVASNYRVFTEYAERIEVVKGPSALLYGMSPNSAVGGVINVVPKRSLDEDLTRFTASYAQDAQLGNHIDISRRFGEERRWGVR VNASVQQGNTVIDDQSRAVGLGAVSLDYRGDRLRGSLDLISQQEKFDAASRPFLIDTGVEMPSAANGRTNVSQDWGWSETRDKSALLSGEYDLTDALTVF AHAGGGRSAVARMSDQTPTLLNAAGDTASTPGYYKFNVQRYTVDAGTRLRFDTGPVGHVTALQVSRYRDELSRGITSGAVILSNIYHPIDQPKPSIAEPD TPKVSATQLSGIAIADTLSVLEQRLQVTFGLRRQHIESSNYNASGTLSTSYDGGKTTPLFGVVVKPWDHVSLYYNYLEGLSKGDVAPANAANAGQIFAPY VSRQQEIGVKLDYGTFMSTLALFQIKKPSGELSGGTFSVQGEQRNRGIELNLFGEVAPGARLLGGVTLLDAQLTKTGIAANRGNTPVGVPDVQANLWAEW DIPWVEGLTFTSGAIYTARQYVNQANSQQLDPWTRIDLGARYTTRIAQRPTTFRATVQNLFDREYWSGVASYGAFSQGSPRTLLLSATVDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site