Pseudomonas veronii 1YdBTEX2, H736_RS0116415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii 1YdBTEX2 Contig22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGGTCACCGGCGCGGTCTACGTTGCTGTTGACGTAGAAGGCGTTGATGTAGCCATCGGTGGAGAAGGTGGTTTCGTCTTTGTCGTACAGCATGATTTC AGCGCTGGCGAACGGGCTCAGGCCCAGGCCGACGAGAAACACAGGCAACAGACGCAGGGGGAGTTTCTTATTGTTATGCATGGTGCGCTCCGCAACGGGG ACATGATGTCGGAGGCGATTATCGAAAGCTGCCAGGCCACGGCCTACGCTGCCTTGGCGCCAATTTCAGGGTGCTTTGGACGGGCAGCGGGGGCTCGGCA AATTCGGTGTAAGACCGGCCCGTTCACAGGCGCGGCACTTAGGGTGTAAGACCGACCCTGAACAACATGCCGAAAGACCGTATCATGTCCTGTTACAGGT CGACCCTTTGCCTCGCAGCGTTTTTTTCCCTTAATCTGCCAAGTCCATGTGGGACACATCGCGAATGTAACCCGCAGCCCGCCACCAAGGACCGCCGCCC
|
|
| DNA Sequence for Gene |
>H736_RS0116415
ATGCTCGCGTTGATTCAGGCTTTTCTGGACGAGGCATCGTCGACCTACACCTATGTGGTGCATGAGGCCGACGATGGCCCCTGCGCCATCGTCGACTCGG TGCTCAATTACGACCCGGCCTCCGGGCGCACCGACACACGCCAGGCCGACAAGGTGATCGCCTACGTGCGCGAACATCGCTTGCAGGTGCAATGGCTGCT GGAAACCCACGCCCATGCCGACCATCTGTCCGCCGCGCCTTACCTGCGCCGGACGTTGGGCGGCAAGATCGCCATTGGCCAGGCCATCAGCAAGGTGCAG CACGTGTTCAAGCACCTGTTCAACCTGGAGCCGGAATTTCGCGTCGACGGTTCGCAGTTCGACCACCTGTTCGCCCCGGATGAAATCTTCCCTATCGGCA ACTTGAAGGCCCAGGCCTTGCACGTGCCCGGCCACACCCCGGCGGACATGGCCTACCTGATCGACGATCAACTGATCCTGGTCGGCGACACCCTGTTCAT GCCCGACGTCGGCACCGCCCGCTGCGACTTCCCCGGTGGCGATGCACACCAGCTGTATGCGTCGATGCGCAAGCTCCTGGCCTTCCCGTCGCAGACCCGA CTGTACGTATGCCACGACTACCCGCCACAAGGCCGTGAGGCCCGGTGCCAGACCACCGTGGCCGAGCAGCGCGCGGGCAATATCCATGTGCATGACGGGG TGGATGAAGCGGCGTTTGTGCAGATGCGGACCCAGCGCGATGCCGGGCTGGGGATGCCGACACTGCTGCTGCCGGCGATCCAGGTGAATGTGCGGGCGGG GAATCTGCCGCCGCCCGAAGAGAATGGAGTGGTGTACCTGAAGATCCCGCTCAATCAGCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACGCGCTCAACCGGCCACCTGCGTCGCGGGTTCACGCGATGGAGAACTGAGCCACAATCTGCTTGAGATCCATCGCCAACTTCGACAGTTCGTGGCTGGC AATCGACGTTTGCCCGGCGGCCGACGAACTCTGGATCGACAGGTCGCGAATGCTGATCAGGTTCTGGTCGACGGAGCGCGCCACATGCGCCTGTTCTTCG GAGGCCGTCGCGATCAACTGGTTCCGGTCGTTGATGTCGGCAATCGCTTCGGTGATCTGAGTGATGGCCTGGCCTGCTTCGTGGGCGATTTTCAGCGAGT CCACCGCTTCGCTGCGGTTCATGGTCATCGACGACACCGCCTCGTTGGAACAGACCTGGATCTTCGCGATCATCTGCTCGATTTCCTGGGTCGAGGTCTG GGTCCGGTGAGCCAGCGCCCGCACTTCATCGGCCACCACCGCAAACCCTCGGCCTTGCTCGCCGGCCCGCGCCGCTTCGATGGCGGCGTTCAGCGCCAGC
|
|
| Amino Acid Sequence |
>beta-lactamase
MLALIQAFLDEASSTYTYVVHEADDGPCAIVDSVLNYDPASGRTDTRQADKVIAYVREHRLQVQWLLETHAHADHLSAAPYLRRTLGGKIAIGQAISKVQ HVFKHLFNLEPEFRVDGSQFDHLFAPDEIFPIGNLKAQALHVPGHTPADMAYLIDDQLILVGDTLFMPDVGTARCDFPGGDAHQLYASMRKLLAFPSQTR LYVCHDYPPQGREARCQTTVAEQRAGNIHVHDGVDEAAFVQMRTQRDAGLGMPTLLLPAIQVNVRAGNLPPPEENGVVYLKIPLNQL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|