Pseudomonas veronii 1YdBTEX2, H736_RS0112320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii 1YdBTEX2 Contig16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTAATCCGTCCTACAGGTACGCTAGCACAACGTTGCTTTAAATATTGCGGCATTCGCCGCTCTCGATAAGGGAGCCCCAAGAACGCCTGAATCAGTTTG GCCCTTTGCGGATATCCAGGCTCAGAGCGTGCCGTTTTCATCGCGCAGTTGGGACTTTAGATGTATGCGAAACATCGATGTCCAGCTCATTTCACGCGTC CGGCTGTCTTGTATAAACCTGAATTGTTACAGAAATGGAAAATTACTTTCACGGGAAACGAGGTCATTCTATCGACGGGAAAGTGTTATAAGTTTTTCAC CTTAGGCTCTGCCCTGTACTAAAAATAAACCGTTATAAAACGGTACCTTGCGCTGCGCAGTCAATGCGTTGCGACTTAGAAACCTTCTCATCTGCCATCG ACTTATGACTCTTCGCTTTTGACCGCCTGACTTCAGGGGAGACCCTGCTGACTGTGCGTTGAGAGACGAGGCAGCTCTATTAAAAACAGGGGAACAAACA
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| DNA Sequence for Gene |
>H736_RS0112320
ATGTCTTTTAAGTGGAATTTGGTGGCGCTGACGGTCTCGCTGGGTGCTAGTCAACTAGCGTCAGCCGCGGGTGTGGAGGACCAAGCGACTGCCAAGGGGT TTGTTGAAGGCAGTAGTTTGAACCTGCTGCTTCGTAACTTTTATTTTGATCGTGACGGTAAGAATTCGGCGGGTGATAAACAGGACTGGTTGCAGGTGAT ACAAGGCAACTTCTCCTCCGGCTTCACCCAAGGCACCATCGGTTTTGGTGTAGATGCTTACGGATACTGGGGCGTGAAGCTGGACGGTGGCAAAGGCAAT GCAGGCTCTGGCAACTTGCCGGTCGACAGCAACGGCCGACCGGAGAATGACTTCAGTAGTGCAGGCGCGTCGATCAAGGCACGGTTCTCCAAGACTGAAC TGCATTATGGCAACTTGCAGCCCAACAACCCGGTCCTGGCCACGGCGGGTACTCGCGCCACGCCTCAAACAGCAACTGGCTTCAACCTGTTGAGCAGCGA AATTGAAGGGTTGAACTTCGACGCCGGGCACTTCACCAGCAGTAACGGTCCGACCACGACCAACAATAGCCACGAATTGTATGCCGGTTATGCCAACATA CCGGCCAAGAGCATTGACTACCTCGGTGGCAAGTACACGCTGACCGATAACTTGTCCATGAGCGTGTTTGCCTCGGACCTCAAGGACGTCTGGCATCAAT ACTACGGTAATGCCAACTACACGATTCCGTTCACTGCCGATCAATCATTGAACCTGGACTTCAACATCTACCGCACCACCGACTCCGGCCAGTCCAAAGC CGGTTCCATCAACAACACCACTTGGTCGTTGGCAGCGGCGTACTCTTTCCTGAGTGCTCATACCGTCACACTGGCGTTCCAGAAAGTTCACGGCGACACG CCGTTCGACTATGTGGCCGTGGGTAATAACAAGTCGGGTGATCTGGCCGACTCCATCTTCCTGGCCAACTCGGTTCAATATTCTGACTTTAACGGCCCAG GCGAAAAGTCCTGGCAGGCCCGTTACGACTTGAACATGGCGACTTATGGCGTGCCAGGGCTGAGTTTTATGACGCGCTACCTCAACGGTGACAATATCGA CGGCACGCACATGCCGGTCGGCAGCGCCTACCGTGCCTATGGTTATGGTGCTGACGGTAAGCACCATGAAACCAACTTTGAAGCCAAATACGTGGTGCAG AGCGGCCCGGTCAAAGACTTGTCGATGCGCGTGCGTCAAGCCTGGCACCGCGGTAATGCTGATCAGGCGGAAGGGGATTACAACGAAACCCGTCTGATCG TGGATTACCCAATCTCGATTTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGACGATCGCCGGTCAAGCCCGGAAGACGCAACGCATTGACGGCCAGTTTCAGCTCTGCTGAAGCTGGCGTTTTTGTTTGTATAACGCGTTCTTTGTC GGCGGGAGGCTATGTCCGACGCTTGCCCTACAAGGTTGAGGTTCCCGTTTTGGCAGCCTGAACCTGCGGATCGTTACGCGCTTGTGCTGATTCGGGTGCC GACCGGCCCTGAGGTCGCTTTGTTGCGAAACCCACTGACATGCACTGGGCATTTCTCATGACCTTCCGGATGTTCTGTTGCCCAATCCTGCACTTTTTCG GATTTTTCGGATCTATCTCTATCCCAGCCATACTCATACTGCGTGTGGACATAAGAACTAGACCTGGTGCCGATGGATCATACGTTCCCGCCTCTTACCT GCCGATGGATGAACCGCCCGCGCTGGCTCGTCCTCGTGTTTCTGCTCTGCACCACCGCCTGCAGCCAGCAACAGGGGCGCGATATCGCCAGGCAATTCAG
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| Amino Acid Sequence |
>porin
MSFKWNLVALTVSLGASQLASAAGVEDQATAKGFVEGSSLNLLLRNFYFDRDGKNSAGDKQDWLQVIQGNFSSGFTQGTIGFGVDAYGYWGVKLDGGKGN AGSGNLPVDSNGRPENDFSSAGASIKARFSKTELHYGNLQPNNPVLATAGTRATPQTATGFNLLSSEIEGLNFDAGHFTSSNGPTTTNNSHELYAGYANI PAKSIDYLGGKYTLTDNLSMSVFASDLKDVWHQYYGNANYTIPFTADQSLNLDFNIYRTTDSGQSKAGSINNTTWSLAAAYSFLSAHTVTLAFQKVHGDT PFDYVAVGNNKSGDLADSIFLANSVQYSDFNGPGEKSWQARYDLNMATYGVPGLSFMTRYLNGDNIDGTHMPVGSAYRAYGYGADGKHHETNFEAKYVVQ SGPVKDLSMRVRQAWHRGNADQAEGDYNETRLIVDYPISIF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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