Strain | Pseudomonas veronii 1YdBTEX2 Contig16, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGACTGGAAAGACCGCTTTATCGGCGCCTATGACGTCGAGTTGCAGGCGTTCATCGACAGCGTGCGCGCCGGGCAAGTGGGCGGGCCGTCGGCGTGGGAT GGGTTTGCGGCGGCAGTCGCGGCGGATGCATGTATTGAAGCGCAGGGCAGTGGGCAAATTGTCCAGGTCAGCCTGCCTGAGCGCCCGCGCTTCTACGGCT AACACTCGGTCAATGTGGGAGGGGGCTTGCCCCCGATAGCAGTGGGTCAGCTAATGAATCTGGATCTGATCCACCGCCATCGGGGGCAAGCCCCCTCCCA CAGTTGGACTGGGTTTGCACTTCAATGAAGGAGTGAATGTATGCGAATTGGACTGGTCGGCTATGGCCACGGAGGGCGCTTCTTTCATGCGCCACTGACT GCAACCCTGCCTTCTACGGCTAACACTCGGTCAATGTGGGAGGGGGCAAGCCCCCTCCCACAGTTGGATTGGGTGTGCACTTCAATGAAGGAGTGAATGT
|
|
DNA Sequence for Gene |
>H736_RS0111510
ATGCGAATTGGACTGGTCGGCTATGGCCACGGAGGGCGCTTCTTTCATGCGCCACTGATTGCAACCCTGCCCGGCGCTACTTTTGTTGGTGTGGTGACTC GCTCACCCGAGCGCCGTCAGCAATTGAGCACTGATCTTCCAGGGGTTAAAGCCTTTGACAGCATCGGCCAGATCGTCGAGGCCGGCGTTGACGCCCTGGT GATTTCCACCACGCTTAAAGGTCGCCCGGCGCTGGTGCTGGAGGCCATCGAGCACGGCGTCGCCGTGGTCAGCGATAAACCTTTCGCCGCCAACGCCGAG CAGGCCCGGGTGCTGATCACCGCGGCTGAACGCCAGGGCGTGTTGCTCAGCGTCTACCAGAACCGGCGCTGGGATTCGGATTTCCTGACCTTGCGCAAAC TGATCGACGCCGGCGCCCTCGGCGCTGTCACCCGGTTTGAATCCCGCGTCGAGCGTTTCAGCCCGCAATCGGTGGGCAATGCCAGCGGCGGCGGCTGGCT GCGCGACCTGGGCAGCCATCTGGTGGATCAGGCGCTGCAACTGTTCGGCCCGGTAGATCGGGTTTTCGCGCAACTGCACTACAGCGCCGAACACCCCAGC ATCGACCACGGCTTCTTTGTCTCCCTGACCCACGCCAACGGGGTGATTTCCCACCTGTGGGGCAACGCCTTGCAGAACAGCCCGGCACCGCGCTTGCGGG TCAGCGGCACCCTGGGTTGCTACACCGTCGACGGGTTGGACGGCCAGGAAGACGCACTGATGGCCGGCAAGTCGCCCAAAACCGAGGGCGAGCACTGGGG CTCTGAGGAGCACCGCCGCTGGGGCTGGTTCGAACAAGGCCCCGAGCGCGAGCGTGTGCCGTCGGAAAAAGGCTGCTGGACCCAGTTCTATCGCCAGTGG CAGGCCGCCGTGCAAGGGCAGGGGCCGCTGCCGGTGGACGCCTACGAGGCGTTGGAAACCACAAGGATATTGGACGCCGCACGCCTGAGCGCCGAGCGCC AGCAAGTGGTTTCGACAAAAATAGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
AATTCTAAAACAAGTTGATATAGAAATTATTTTCCAATAAAGTCTTTTCCAGGTTGCATAAAGTACGTTCCGGACTCGATCCCGACGACTCAACAAAAAC AAGATCAAAAACAACCAGGTACCGTCAGATGAAAATCTTCAACGCTGTACTGCGAGTTTTACGCCCAGCCCTTGCGCCACGCGGTCTGCCCCGCACCCGG CCGTTTTACTTCTCCTTCCTCAACGTGCTGTGCGTCGAAAACCAAGGCGCCCTGGTGTGCTGCATTCCGGGAGCACCGCTCGTCCGCCTGCCGTCATCCT CGCTCTGAAAAACGCAACGTCCAAAAAACCAACAAGAAAGTGGAGACAGACCGTTCATGAAGACCCCGATCCGTTTTACCGCGCTGGCGTTGTCCCTGCT GCTGGCCAGCGGTTTTGCCATGGCTGCCGATCTGAAGATCGGCGTGAGCATGTCGCAGTTCGATGACACCTACCTGACCAATGTGCGTGAGTACATGGAC
|
|
Amino Acid Sequence |
>oxidoreductase
MRIGLVGYGHGGRFFHAPLIATLPGATFVGVVTRSPERRQQLSTDLPGVKAFDSIGQIVEAGVDALVISTTLKGRPALVLEAIEHGVAVVSDKPFAANAE QARVLITAAERQGVLLSVYQNRRWDSDFLTLRKLIDAGALGAVTRFESRVERFSPQSVGNASGGGWLRDLGSHLVDQALQLFGPVDRVFAQLHYSAEHPS IDHGFFVSLTHANGVISHLWGNALQNSPAPRLRVSGTLGCYTVDGLDGQEDALMAGKSPKTEGEHWGSEEHRRWGWFEQGPERERVPSEKGCWTQFYRQW QAAVQGQGPLPVDAYEALETTRILDAARLSAERQQVVSTKIE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|