Strain | Pseudomonas veronii 1YdBTEX2 Contig16, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGCGTGGACCACGTCGATCATCAGGCCCTTGGCGGCCTTGGGGGATTCAATTGCAAACACCGGCTGTGCGGCGGTATCGCTGGCTGCCAACAGCGGTGG CGACAACGCGGCACCGGCCAGCAACGAGAGCGCTGTGGCCAGCAACGCAACCCTGCGTGCGGCGCGTGGGCGGCAAACAACCCAACCCATGACAGGCTCA CTCATAGACCTTTCTCCCATTTATTATTGTTAGGTCGTCTTACCTTCCCGGGCTCTGAAACCTGCAATCTAGAGCGCCTGGAGGAAGTAGGGGCCATCCT ATCGGGCTTTCGAATCGTCTGACAATCGGCGCTACGTTATCTTTTGTTAACTGGCGGCTTTTAACCCTGCGCTGAATATAACCACATCAACTGCAATGAT ATAGCCGCAGAAATGAATTATTTTTTCCACATATTGAATTATGAGAATTTATATTCCATTAATAGCCTCCCTGAAAACAATAATCCAAAGGACCACGGCT
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DNA Sequence for Gene |
>H736_RS0111195
ATGCGCAAACTCGGAATCGGCCTGATCGGCACAGGCTTCATGGGCCGCGCCCATGCCCTGGCGTTCAATAACGCCCGCACGGTATTCGAGCTGCCGGTCA GCCTCAAACTGGCCGCCCTGGCCGATGCCGACACCGAACGCGCCCAGCGCTGCGCCGAGGCCTGGGGATTTGCCCAGGCCCATGGCGACTGGCAAGCGCT GGTCAACGACCCCACGGTCGATGTGGTGGCGATCACCACACCGAACCATTTGCACTACCCCATGGCCATGGCCGCGCTCGCGGCGGGCAAGGCGGTGTAC TGCGAAAAACCGCTGGCGGTCAGCCTGGCGCAGGCCGACGCCATGCGCCACGCCGCGAGTGCGGCGGGCGTGGTGACGCGGGTCGGCTACAACTACCAGC ACAACCCGATGATCGGGTGGGCAAAGCAGATCATCGCCAACGGCGAATTGGGCGAAATCATCAGTTTCCAGGGTGAGTTCAGCGAAGACTTCATGGCCGA CCCGGCTTCACCCTGGTCGTGGCGCTGTGAGGTGGAACATGCCGGTGGCGCCCTGGCGGACCTGGGCAGCCACTTGCTGTCGATGGCACGCTATCTGGTG GGCGATGTGGTCAGCGTGTGCGCCGATACGCAGACCGTGCATGCGCAGCGCCCCGCCGTCAAAGGCGGCGACACACTCAAGTCGATTGCCGTGGACGACC AGGTACACGCCCTGCTGCGTTTCGCCAACGGCGCGCGCGGCACGCTGAGCAGCAGTTGGCTCAAGCACGGTTACAAAAACCACCTGGCGTTTGAGATCAG CGGGACGCAAGGCACGTTGGCCTTCGATCAGGAGCGCTTGAACGAACTGCGCCTGTGCCGCAAGGGCCAGGACGGCTTCCAACGCCTGCTGGCCGGCCCC GCCCTGCCCGGCTACGCGGCGTTCAGCCCGGCCGCCGGCCATCAGTTGGGCTACAACGAATTGAAGACGCTGGAAGTGCGCGAGTTGATTCTGGCAGTGG CCGGCCAGGGCGCGGACGGCAGCGACTTCGAGGCGGCGTGGGCGGTCGAGCGGCTGGCGACGGCGATTCGCGTGGCGGCTCGAGAACAGCGCTGGGTCAA TGTGAACTCGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AATGTGGGAGGGGGCTTGCCCCCGATGGCGGTGGATCAGTCGATAGGCTCGGTGACTTCAACTCCGCTATCGGGGGCAAGCCCCCTCCCACATTTAGATC ACCTAGAGATTCAAGTTAGCGCAGCGCGCGGCGCAGCACCTTGCCCACTGTGGTCTTGGGCAGCTCGGTGCTGCGAAACTCCACGTGGCGGCTCGAGAAC AGCGCTGGGTCAATGTGAACTCGGTCTGAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGTGGATCAGTCGATAGGCTCGGTGACTTCAACTCCGCTATC GGGGGCAAGCCCCCTCCCACATTTAGATCACCTAGAGATTCAAGTTAACGCAGCGCGCGGCGCAGTACCTTGCCCACTGTGGTCTTGGGCAGCTCGGTGC TGCGAAACTCCACGTGGCGGCTCGAGAACAACGCTGGGTCAATGTGAACTCGCTCTGAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGTGGATCAGTCG
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Amino Acid Sequence |
>1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
MRKLGIGLIGTGFMGRAHALAFNNARTVFELPVSLKLAALADADTERAQRCAEAWGFAQAHGDWQALVNDPTVDVVAITTPNHLHYPMAMAALAAGKAVY CEKPLAVSLAQADAMRHAASAAGVVTRVGYNYQHNPMIGWAKQIIANGELGEIISFQGEFSEDFMADPASPWSWRCEVEHAGGALADLGSHLLSMARYLV GDVVSVCADTQTVHAQRPAVKGGDTLKSIAVDDQVHALLRFANGARGTLSSSWLKHGYKNHLAFEISGTQGTLAFDQERLNELRLCRKGQDGFQRLLAGP ALPGYAAFSPAAGHQLGYNELKTLEVRELILAVAGQGADGSDFEAAWAVERLATAIRVAAREQRWVNVNSV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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