Pseudomonas veronii 1YdBTEX2, H736_RS0102515

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas veronii 1YdBTEX2 Contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTCAGCAGTTTTGCGATCAACAACACGATCAAGACCCTGGACGATGTGCCGTTGTTTGTCAGCGAGGGCAAGGTGGAAGAGAAGCTCAAGACCATCCGCA GCTCGGATTATCTGTCGTTCTGCTACGAGCAGTTACTCGGCCATGAAGGGGCGCTGTGCATCTTCGGCCACGACCTGGGAGCGCAGGATAAACACTTGGT GGATGCGATTCGCCAGGCCCGGGTGACGACCCTGGCGATCGCGGTATCGGGGCGCAGCGATGGGTTTATCCGCCAGCAGAAGCGGCGGTATTCACAGTTG TTCGATGGCAGTGGCGTGGCGTTGAGATTCTTTGCCGCGCGCAGCCATGCGCTGGGGCATCCGGCACTGTCGGTGCCGGTCGAACGCTGAGGTCCTGAGC CGCTTGCGCAGGGTCAGTGTATTTGCCTGGAGACAAACGACAATAATTCTCGATATCATTCACGACTTTTCTACGTCGTGCTTCGCCAAGAAGGATATCC
DNA Sequence for Gene
>H736_RS0102515
ATGTCGCGTCCCAAATCCGACCCGCTGTCGGACGATGCCTTTCGCGGGTTTTATGCAGACATTCTGTATTTCCTGCGCAAGCGCACGGACAACGCCAGCG ACGCGGCGGACATGACCCAGGATGTCTTCACCCAATGGCTGGACTACCGCGACCGGGCCAAGGTCGAGCAGCCACGGGCGTTTCTGTTCCAGATGGCGCG CAACCTGTTGCGCGATCACTGGCGCAAACAGAAGGTACGGCAGGCCGTCCACGCCGATCAGGTTGAAAGGGATGCCGAGCCGGTCATTGACGAGCACAAC CCGCCGATGGCCGCCGCGCTTCGCCTGCAACGCCTGGAACAGTTGAAAGAAGTCCTCGCCGAACTCTCGCCGCGCAGGCGAGAAGCCCTTATGCTGCATC GCTTCGAAGGCTTGAGCCAGGCGCAGATCGCCGAGCGCATGGGTATTTCGACCAGCATGGTGGAAAAGCACATCGCTTTTGCCCTGCTGCATTGCAAGCG ACGCCTTCAACCTGACCCCGGCACGGAGCAGCCAGCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCGCCTGAGCGACATCGACGCCCCGGACATCGAAACGAGCGACGCCGTCGATGCCCAAGCCGCCAGCTGGTTTGCACGCAACCGCAACGCCACCGCACG CGCCGACCGCAAGGCCTTCGCCGCCTGGCAGGCGGTGCCGGCCCATGCCCAAGCCTATGCCGAATTCGAACAACTGTGGGCCGACCTCGCCCAGTTGCAG CAACTGAACACGCCCGTGGCGCTGCCCAAGCGCACCGCCGTGATCTGGCGCCCGGCCCTGGCCGTGGCGGCCGCCCTGCTCTGCGCGGTGCTGACCACGC CCCTCGGCGCGCCGCGCGAGTTGTACCACACCCAGGTCGCAGCCCACGCCAAGGGCATGCGTACCCTGAACCTGCCCGATGGCAGCCGCCTCTACGTGAA TGCCAACACCCGCCTGCGCGTAGATTTCAGCGCCCACCAACGCATCGTTCACCTGGACAAAGGCCAACTGTATATCGAAGTGGCGGCCGACAAGGAACGG
Amino Acid Sequence
>RNA polymerase sigma factor
MSRPKSDPLSDDAFRGFYADILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRKQKVRQAVHADQVERDAEPVIDEHN PPMAAALRLQRLEQLKEVLAELSPRRREALMLHRFEGLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQPDPGTEQPA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site