Pseudomonas veronii 1YdBTEX2, H736_RS0101770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii 1YdBTEX2 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCTTCGAAGAAGATCTGCGAGAGTTTCACGTCCTGATTGCCCGTGGTCATCATCAGGCGGTGCAGGTTCACCGATTCCTTGCTGTTGACCAGGCGAT GGAAGCGGCGCCCTATATTCAGCAGCACCGTCTCCACAGGCACACCCTCGGGCAGCTCAAAGTACATCACCGGCAACTGTTCTTCGCACTTGGCCATCAC GGCGGCGGTGAACAAGGTCTCTTTGTCGGTGAAGTGGCTGTAGACGGTCAGTTTTGATACGCCGGCCTCAAGGGCCACGGCATCCATGCTGGTATTTGCG TAACCGTTGCTCAAAAACAGGATTTTCGCTGCTTCGAGGATTGCCTGGCGTTTTGCCATGTCCTTGGGACGCCCGGGGCTACTGGTATTGACAAGATTGT CGGACATTTCCACCTTTAATACTGGACTGGTGAGTTTGGTATTAATAACATACTGCCCAGTATAATTATTCCTAGCACCATTTGCGAAAGGTCCTTCAGC
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| DNA Sequence for Gene |
>H736_RS0101770
ATGCGCAGCATTCTCCTGCCCCTTGCGTTGCCTGCCAGCCTGGTCTTTCTACTCGCCGCCTGCGGCCATGAAGAATCGCCCCAGACTACCCTCCGCCCGG CCATGGTGGTGCAACCACAGCCTGCAGCGCAGATGATGGACAGTTATCCAGGCGAGGTGCGTGCCCGGTACGAACCGGACCTGGCCTTTCGCATCGGCGG CAAGGTCAGCAAACGGCTGGTGGAGGAGGGCGAGCGGGTCAAGGCCAATCAACCGCTGGCGGAACTCGACCCTCAGGATGTGCGCCTGCAACTGGAAGCC ACCCGCGCCCAGGTGGCCGCCGCCGAGGCCAACCTGCGGCTGGTGCGTGCCGAGCGTGACCGCTACAAGACCCTGATGGATCGTCAGTTGGTCAGCCGTT CCCAGTACGACAATGCTGAAAATCTGTACCGATCAGGTGAGGCGCGCCTCAAGCAGATCAAGGCCGAGTTCGATGTGTCCAGTAACCAGGCCGGTTATGC CGTACTCCGCGCTCCTCAGGACGGCGTGGTTGCCAAGCGCGCGGTGGAAGTCGGCCAGGTGGTGTCCGCCGGCCAGACCGTGTTCACCCTGGCCACCGAT GGCGAGCGTGAAGTGCTGATCAGCCTGCCCGAGCAAGGCTTCGGCCGGTTCAAGATCGGCCAGCCGGTGTCGGTCGAGTTATGGAGCCAGCCGGGCCAGC GATTTGCCGGACGTATTCGCGAACTGTCGCCCGCAGCCGATCCGAAATCGCGCACCTTCGCTGCGCGCATCGCCTTCACCGGCGGCAAGGTTCCGGCCGA GTTGGGCCAGAGCGCCCGCGTTTTCATACAGGCAGACGGTGTTATTCCGCTGTCGGTGCCGCTGTCAGCCCTGAGCGCGGAGAACGGCGTGTCCTACGTC TGGCGCGTGCAGCCGGATGACACCCTTGTGCGTACCCCGGTACGTATCGGCGCCTTTGGCGAAAAAACCGTACCCGTGCTCGAAGGCTTGAGCCCTACCG ACTGGGTGATTGCCGCCGGCGTTCATGTGCTCCATGAGGGGCAGCAAGTGCGCCCAGTGGATCGCTCCAACCGGGTGGTGAATCTGGCGGTCAAGGAGTA G
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCGATGGGTTTCAATCTTTCCGAATGGGCGTTGCGTAATCGCCAGATCGTACTGTTCCTGATGATCCTGCTGGCGGTGGTCGGCACTTTGTCCTACA CCAAGCTTGGGCAAAGCGAAGACCCGCCGTTCACCTTCAAGGCCATGGTGATCAAGACCAATTGGCCCGGTGCCACGGCCCAGGACGTGTCGCGCCAGGT CACCGAACGCATCGAGAAAAAGCTCATGGAGACCGGTGAGTACGAGCGCATTGTGTCTTTCTCGCGCCCCGGCGAATCCCAGGTCACCTTCATCGCCCGC GATGCCATGCGCTCGGCGCAGATTCCCGAGCTGTGGTACCAGGTGCGCAAGAAGATCAGCGATATTCGCCAGACCTTGCCGCCGGATATCCAGGGACCGT TTTTCAACGATGAATTCGGCACCACCTTCGGTAATATCTACGCCCTGACCGGCGACGGCTTTGACTATGCCGTGCTCAAGGACTACGCCGACCGCATCCA
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| Amino Acid Sequence |
>RND transporter
MRSILLPLALPASLVFLLAACGHEESPQTTLRPAMVVQPQPAAQMMDSYPGEVRARYEPDLAFRIGGKVSKRLVEEGERVKANQPLAELDPQDVRLQLEA TRAQVAAAEANLRLVRAERDRYKTLMDRQLVSRSQYDNAENLYRSGEARLKQIKAEFDVSSNQAGYAVLRAPQDGVVAKRAVEVGQVVSAGQTVFTLATD GEREVLISLPEQGFGRFKIGQPVSVELWSQPGQRFAGRIRELSPAADPKSRTFAARIAFTGGKVPAELGQSARVFIQADGVIPLSVPLSALSAENGVSYV WRVQPDDTLVRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRPVDRSNRVVNLAVKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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