Pseudomonas stutzeri TS44, YO5_11055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri TS44 Contig00029, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGTGCTGGAGTGACAGCACTTCGTCAGAACGCTCTTGTTCTACTTTATGTAGTGTCATGGAAAAAACACTACAAAATGATTGACGAGGCTTTCCCGGC AGCGCATCATTGCCCCGCTCCCGCTAACCAGAGGCTCTGGAAAGGGTCTCCGGGGCGCGCTCCAGCCAACCAGCCGAGCCGCTCCGTGACTGTACTGCCC ACAAGGCGGACTGACGAGGTTGCGACTGGAACGAGTCGTCCTGAGGGACGGGGAAGCGATTAACGCATCAGTCAGACTGTAGTCTCGACGTTGCCAGGCC CCACGGCAGCCACGCCAACCGGGAGCTTCGCGACCAAGAGCCAGCCCGGCGATCGTGTCCATGCCCTCCTCCTCGGTTTCAATCCTCGTCCTGGTCGCAG TTCGACGCTCTGCCGCGTGTTGCTCGCATGATCCGTTAGCACGCAGTTTTTGGTGGGAAAGTCGGTGCTCAACCAAATTCACATCTATGAAGGATTGACC
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| DNA Sequence for Gene |
>YO5_11055
ATGTCCGCATATCAAGACGACATCAAGGCAGTTGCCGCCCTGAAAGAGAAGTTCGGCAGCAGCTGGAGCGCTATCAACCCGGAATCCGTAGCCCGCATGC GCGCCCAGAACCGCTTCAAGACCGGTCTGGAAATCGCTCAGTACACCGCCGACATCATGCGCAAGGACATGGCCGAGTACGATGCCGACGCGTCCGTCTA CACCCAGTCGCTGGGCTGCTGGCACGGCTTCATCGGTCAGCAGAAGCTGATCTCCATCAAGAAGCACCTCAAGACCACCAACAAGCGCTACCTGTACCTG TCCGGCTGGATGGTTGCCGCGCTGCGCTCCGACTTCGGTCCGCTGCCGGACCAGTCGATGCACGAGAAGACCGCCGTTTCCGGTCTGATCGAAGAGCTGT ACACCTTCCTGCGTCAGGCTGACAGCCGCGAACTGGACCTGCTGTTCACCGCTCTGGACGCCGCTCGTGAAGCCGGCGACAGCGCCAAGGCCGCCGAGAT CCAGAACCAGATCGACAACTACGAAACTCACATCGTCCCGATCATCGCCGACATCGACGCTGGCTTCGGTAACCCGGAAGCCACCTACCTGCTGGCCAAG CGCATGATCGAAGCCGGTGCCTGCTGCATCCAGATCGAGAACCAGGTTTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACCGTTCCGCACG CCGACTTCCTCGCCAAGATCGCTGCCGTTCGCTACGCCTTCCTCGAACTGGGCATCGACAACGGCGTGATCGTCGCTCGCACCGACTCCCTGGGCGCCGG CCTGACCAAGCAGATTGCCGTGACCAAGGAGCCGGGCGACCTGGGCGACCAGTACAACGCCTTCCTCGATTGCGAAGAAGTTGCCGCCTCCGACCTGGGC AACGGCGACGTCGTGATCAATCGTGGTGGCAAGCTGCTGCGTCCGAAGCGCCTGCCGTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGACCGCT GCGTCCTGGACTGCATCACCAGCCTGCAGAACGGCGCCGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAGGCCATGGTTGACCG CATCCGCGAAGCCATCCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCGTTCAACTGGACCCTGAACTTCCGTCAGCAGGTGTTCGACGCCATGGTT GCCGAGGGCAAGGACGTGTCCGCCTACGACCGCGCCAAGCTGATGAGTGTCGATTACGACGAAACCGAACTGGCGCAGATCGCCGACGAGAAGATCCGCA CCTTCCAGAAGGACGGTTCCGCTCACGCCGGTATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCGCTGTCTACCGACAACCTGGCCAA GGGCTACTTCGCCGACCAGGGCATGCTGGCCTACGTGAAGGGCGTGCAGCGTCAGGAACTGCGTCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCCGACATCGGCGACAACCACAAGGAGTACTTCGCTGGCGAAGCTGCTCTGAAGGCGAGCGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACGGTTCCGCCTGGCAACAGGCTGTGGTGTAGCAAAGGCCCCGGCATAGCCGGGGCCTTTGCGTTTCGGGCGTTTATGTCGCTCGTCGGCACGCAAA CGGATGTCATATAGCTGTCTCACGGCAAAACTAGAGTCAGGATTCCGTCAATCTACTCAGGGAACGCGACGTGAGCACCGATAACGACAATATTCTGTTC GGCAACGGCGATGAGCTACCCAGCAACCGTTCCGGCAACCCTCATATCCAGGATGTGATCAACCTCGGCCGTCGCCAAATCCTGGCGGGCGGCGCCTCGC TCGGCGCACTGGCCTTTCTGGGCGCGACGCTACCGTCGGTCGTTCAGGCCGCTGACCAGACGGCTGAGCAGCTCAGCAATTCCTCTCTGAAGCGTCGCAA CCGGCTCCCCTTCACCGCCGTCCCGGTCACTCGCCACGATGGCATCAGTGTGCCGTCGGGATACACGGCAACCCCCTTCATTCCGTGGGGCACGCCCATC
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQDDIKAVAALKEKFGSSWSAINPESVARMRAQNRFKTGLEIAQYTADIMRKDMAEYDADASVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADSRELDLLFTALDAAREAGDSAKAAEIQNQIDNYETHIVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKIAAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDQYNAFLDCEEVAASDLG NGDVVINRGGKLLRPKRLPSNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKAMVDRIREAIPNAKLVYNNSPSFNWTLNFRQQVFDAMV AEGKDVSAYDRAKLMSVDYDETELAQIADEKIRTFQKDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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