Pseudomonas stutzeri TS44, YO5_13548
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri TS44 Contig00009, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACTGGGTGATGCACCACTGGGCATTGTTCGGCGACCAGATTCCCACTCGTTCGCCAGCTTGCAGACCGAGGGCCAGCAGGCCACGCGCGCAACGCTC CACCGCCTCCGCCAGTTCCGCCCAGGTGTAACGCAGCTGCTGATGGCGCACCACCAGAGCCTCGCGCTGGGGAAAGCGCTCCACGGTACGGTCGAATGCC GCGCCGATGGTCATGGGCAACAGGGGTTTGCTCTGCGGTCCGCAGGTATAGCTCGGAAGACTCATGGCGATTTTTCCTCAGTCTTATGTTTGTTATGAGG CTTTACTTTCCCAGGGCGCTGGCGGTGTTGACAGTCACCCAAGGACACGGTTACGTTAACGTAAAGGTAACTAGCTGGCAACCCACTCCAAAGGTCGAAA ATCGAGGCCCGCGGAGCGCCGCCGAAGACGCTGTAAAAAGCCTTTTCGCGGCCGAACGAACCCTCTACAACAGAACAACTACAAGACAAGCAGGTGGCCC
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| DNA Sequence for Gene |
>YO5_13548
ATGAACTACTCCAGCCTCAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGAGCAGGTGCAGGCCTTCGTCGCCGCCGAACTGGCGCCGCGTGCCG AGGCTATCGACCACGAAAATCTGTTTCCGGCTGACATGTGGAAGAAATTCGGCGAGATGGGCCTGCTCGGCGTGACCGTCTCCGAGGAGTACGGCGGCGC CGGCCTCGGCTACCTGGCGCACGTGGTGGCGATGGAAGAAATCAGCCGCGCCTCCGCCTCGGTCGCCCTCTCCTACGGCGCCCACTCCAACCTGTGCGTC AACCAGATCAACCGCAACGGCAACCCCGAGCAGAAAGCCCGCTACCTGCCCAAGCTGGTCAGCGGCGAGCACGTCGGCGCGCTGGCCATGAGCGAGCCGA ATGCCGGCTCCGATGTGGTGTCGATGAAGCTGCGCGCCGAGAAGCGTGGCGACCGCTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCGGA CGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGACAAGGGCGCGCACGGCATCACCGCGTTCATCGTCGAACGCGACTGGAAGGGCTTCTCCCGC GGCAACAAGTTCGACAAGCTCGGCATGCGCGGCTCCAACACCTGCGAGCTGTTCTTCGATGACGTCGAAGTGCCGCAAGAGAACGTGCTCGGCGCCGAGA ACGGCGGCGTCAAGGTGCTGATGAGCGGCCTGGACTACGAGCGCGTGGTGCTCGCCGGCGGCCCGACCGGGATCATGCAGGCCTGCCTCGATGTGGTGGT GCCGTACATCCATGACCGCAAGCAGTTCGGCCAGAGCATCGGCGAGTTCCAGTTCATCCAGGGTAAGGTGGCGGACATGTACACCCAGCTCAACGCCAGC CGCGCCTACCTGTACATGGTGGCGCAGGCCTGCGACCGCGGCGAGACCACCCGCAAGGACGCCGCCGGGGTCATCCTCTACACCGCCGAGAACGCCACGC AGATGGCCCTGCAGGCGATCCAGATCCTCGGTGGCAACGGCTACATCAACGAATTCCCCACCGGCCGCCTGCTGCGCGACGCCAAGCTCTACGAGATCGG CGCCGGCACCAGCGAGATCCGCCGCATGCTGATCGGCCGCGAGCTGTTCAACGAATCCAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACGAAGCAGAGGCGGGAAACCGTAGGGTGGGCTTCAGCCCGCCATACCCGGAGGTGGTGGGCTGAAGCCCACCCTACCCTTCGTCCAGCCTCCAGTGCT CTTTCCGAGGGTTCTACATGGCCATCCTGCACACCCAGATCAACACCCGTTCGCCGGAATTCGCCGCCAACAGCGCGGCGATGCTCGAACAGGTGAACAA CCTGCGCGCCCTGCTCGGCCGCGTCAGCGAAGGCGGCGGCGCCACCGCCCAGCAGCGCCACGTCTCGCGCGGCAAGCTCTTGGTGCGCGAGCGCATCGAC ACGCTGCTCGACGCCGGCTCGGCCTTCCTCGAACTCGCGCCGCTGGCCGCCCACGAGGTGTATGGCGAGGACGTCGCCGCCGGCGGCGTGGTGGCCGGTA TCGGCCGCGTCGCAGGCGTCGAGTGCATGATCATCGCCAACGACGCCACCGTGAAGGGCGGCACCTACTACCCGCTGACGGTGAAAAAGCACCTGCGCGC
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MNYSSLNFALGETIDMLREQVQAFVAAELAPRAEAIDHENLFPADMWKKFGEMGLLGVTVSEEYGGAGLGYLAHVVAMEEISRASASVALSYGAHSNLCV NQINRNGNPEQKARYLPKLVSGEHVGALAMSEPNAGSDVVSMKLRAEKRGDRYVLNGSKTWITNGPDANTYVIYAKTDLDKGAHGITAFIVERDWKGFSR GNKFDKLGMRGSNTCELFFDDVEVPQENVLGAENGGVKVLMSGLDYERVVLAGGPTGIMQACLDVVVPYIHDRKQFGQSIGEFQFIQGKVADMYTQLNAS RAYLYMVAQACDRGETTRKDAAGVILYTAENATQMALQAIQILGGNGYINEFPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFNESK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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