Pseudomonas stutzeri TS44, YO5_20097
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri TS44 Contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGGCGGTGGACGATCTACTGCAGCAGCAGCGCGTGCAGCTGGGCAACCGCGTCGCGCCGTCGACCCGCGAAGGCATCCTCAGCGTGATCAAGGAAGTG CGCCGCGGCGGCTCGGTGGGCATTCCCGCCGACCCCGAGCCCAGCGAAGGCAGCGGCCTGTTCGTGCCGTTCCTCGCCATCCAGGCGCTGACCAGCAAGT TCGTCCCCGGCATGCTCGCCGGCGGCAAGGCGGTCGGCGTGTTCCTGCATGCCGTGCGCCTGGAAGACGGCTCGGGCTTCAAGGTGATCCTCGAGGCGGC GCCCGAAGGCATGTACAGCGAGGATGTGGAAACCGCCGTGGCGGCGATGAGCGCGACGATCGAGAAATACGTGCGCGCCTATCCCAACCAGTACATGTGG ACGATGAAGCGCTTCAAGAAGCGCCCGCCGGGCGAGCCGCGCTGGTACTGAGCGGACCGGACCGGCGCGACCGGCAGAACCACGAACGGGAGGAGTGTTC
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| DNA Sequence for Gene |
>YO5_20097
ATGGGTAACCAGCGCCAGCACCCGCGCGCCAGCATGAAGTGCCGGATTCGCATCAGTCATCCGGCCTTCGGCGAGGTCTTCGCGCAGACCCGCGATCTGT CCGATGGCGGCGTCTACATCCGGCACCCCGCGCTGGCGGCGCTGGCTCCCGGCAGCGTGGTGAGTGGCCAGGTGCAGGACCTGCCGATTCCGGCGCCGGT GCTGCGCCTGGAGGTGATGCGGGTGGATGCCGAGGGCGCCGGCCTGCGCTTTCTGCAGGACGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGCGGGCTCAGTCCGGCGTGAGCTTGTCGAGCCGGCGCAGGAACAGCGCCATTTCCTTTTCCGCCTGCTTGTCGCCGCGTGCGCCGGCGGCGGCGATG CCCTGCTGCCAGGCCTGGCGCGCGCCGGCGATGTCGCCGTCGGCCTGCAGGGCCTTGCCGAGCAGCTTCCAGGCCGCCGAATACTTCGGATCGAGTTCCA CGCAGCGGCGCAGGTGCAGCGCCGCCCGGCCCGGTTCGCCGGCATCCAGATAGCCCTTGCCCAGGCCGAAGCGCAGCATCGGGTTGTCCATGCCTTGCGA GAGCATCTTTTCCAGGGATTCGAGCATCATCGGACCTTTAGCGCAGCATGCGCGGTGCTTTCCCACACTGTAGTGCACGGCCCGGGTCGGGCAAGGCCGG CAGCATACGCCATTGGTCTGGGGTGGCGCTGCTCAGAAGAAGGTCAGGCCGGCCTGGAACAGCCGCTCCACGTCGCGGATGTGCTTCTTGTCGACGAGGA
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| Amino Acid Sequence |
>pilus assembly protein PilZ
MGNQRQHPRASMKCRIRISHPAFGEVFAQTRDLSDGGVYIRHPALAALAPGSVVSGQVQDLPIPAPVLRLEVMRVDAEGAGLRFLQDD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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