Pseudomonas stutzeri TS44, YO5_19922
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri TS44 Contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGATCACCAAGGTGTTCGACAAGTCGTCGCCGCTGATCTTCAACGCGCTGACTTCCGGCGAGCGCCTGAACAAGTGCCGCCTGGAGTGGTACCGCACC TCGTCGACCGGCACCCAGGAACACTACTTCACCATCGAACTGGAAGACGCGGTGATCGTCGACGTGCAGTCGCGCATGCCCAACTGCCAGGACCCGAACA TGTCGCACTTCACCCATCTGGAAGATGTGTACTTCACCTACCGCAAGATCGTCTGGACCCACGAAGTCTCCGGCACCTCCGGCTCCGACGACTGGCGTAC CCCGATCGCCGGCTGATTCGCCGCGGACCCGCTTCGGCCAGGCTTGCCTGGCCGAACGTCTTTTTGCGAAGCACCGAACAGAATCCGAGGTTGCCGTTGC GGAATGCGTAAAGCGCGCGTTGCAGAGCGGCCGGTCTGTGCTACATCGACGCTCCGCAGCGCCCCTGCGCCGATACATGGACTGAACAGGAGGAACATGG
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| DNA Sequence for Gene |
>YO5_19922
ATGTTCGCCCCAGCCAACCAGGCCCATTTCAACCTCACTTTTGACGGCTTCGAGCACGACTTCAAGGTGCTCGAATTCCAAGGCCGCGAGGCCATCAGCC AGCCCTATCGCTTCGACCTGGAACTGGTCAGCGAGCGGCCCGATCTGGAGCTGGAAAGCCTGCTGCACCGTCCGGCCTTCCTCGCCTTCGCGCCGGACGG CAGCGGCATCCACGGACTGGTGCATCAGGCTGGTCAGGGTGAATCCGGCAAACGCCTGACCCGTTATCGGCTCACGCTCGTGCCGCAGCTGGCCTACCTC GCCCATCGCAGCAACCAGCGCATCTTTCAGCACCTGAGCGTGCCGCAGATCGTCGCCCAGGTACTCGAGGAGCACGGTATCCAGGCCGACGCCTACCGCT TCCAGCTCGGCCCGGTGATCTACCCGCCGCGCGAATACTGCGTGCAGTACGACGAATCCGACCTGCACTTCATCCAGCGCCTGTGCGAGGAAGAGGGCAT CCACTATCACTTCCAGCACAGCACGGCCGGCCATGTGCTGGTGTTCGGCGACGACCAGACGGTCTTCTCTACGCTCGCTACCACCAGCTATCAGCAGGAC AGCGGCCTGGTCGCCGACCAGCCGGTGATCCAGCGCTTCGGCCTGCGCCTGGAAACCCGCACCAGTCGCGTCACGCGCCGCGACTACGACTTCGAAAAGC CGCGCCTGACCATGGAGGCCGCGTTCCACAGCGACTTCCAGCCGGATCTCGAGGACTACGACTACCCCGGCCGCTTCAGCGAGCGTGCCCGCGGCAAACA CCTGTCGCAACGCGCGCTGGAGCGCCATCGCCACGACTATCAGCTGGCCGAGGGCGAGAGCGACCAGCCGCGGCTGCTGAGCGGACATTTTCTCGATCTG GGCAAGCACCCTCGCGCCGACTGGAACCAACTCTGGCTGCTCACCGAGGTGTTGCACGAGGGCAAGCAGCCGCAGGTGCTGGAAGAGTCGGTCACCAGTC ATGTCGATACCGGCGATGGCTTCGTCCAGGGCTACCGCAACCGCTTCCGCGCCATGCCCTGGAACGTTCCCTTCCGCCCTGCGCTGAGGCATCCAAAGCC GAGGGTGCTGGGCAGCCAGACCGCCGTGGTCACCGGCCCGGCTGGCGAAGAGATCCACTGCGACCAGTACGGCCGCGTGCGAGTTCAGTTCCACTGGGAC CGCGAAGGCCAATCTGATGACAAGACCAGCTGCTGGCTGCGTGTCAGCTCCAGCTGGGCCGGCGACCGCTATGGCGGCATCGCCATTCCGCGGGTCGGCA TGGAAGTGCTGGTGACCTTCCTCGAAGGCGATCCCGACCAACCACTGGTGACCGGCTGCCTGTACCACAAGGAGCACCAGGTCCCCTACGACCTGCCGGC GAACAAGACCCGCACGGTGTTCAAGACGCTCAGTTCCCCCGGCGGTGGCGGTTACAACGAACTGCGTATCGAAGACCGCCAGGGCGCCGAACAGATCTAC CTCCACGCCCAGCGCGACTGGGACGAGAACATCGAGCACGACCAGAAGATTCGCGTCGGCCACGAACGTCACGATACCGTCGAGGCCAACAGCCACAGCG AATTCCGCGCCGAAGAACACCGCACCACCCACGCCGACCGCAAGAGCGAAATCCGCGCCAGCGATCACCTGACTGTCGGCAACAGTCAGCACCTGAAGAT CGGCAGCGGGCAGTTTGTCGAGGCTGGCAACGAGATTCACCTCTCTAGCGGCCTCAAAGTGGTGCTGGAGGCTGGCAGCGAACTCACCTTCAAGGCAGGC GGCAGCTTTGTGAAGCTCGACGCCAGCGGCGTGACGTTGGTGGGGCCGGTGGTCAGGGTGAATTCGGGTGGTACGCCGGGGAGCGGGGCGGGCGCGGCGC CGATATCACCTGACTTGCCCAAACCAGCAGATACCGCACCGGTGGGCGAGAAAACCGGCACTGCCACCATCAACCTACCGTCTCTACTTCCAGAAAAGGA GGGCAAGGGGCCGCAGCAACTGATCGTGGACGTCTGGGGTGACCCGGAGCAAGGCGGGCAAGTCAAGTTGCTCGACCCGGAGGAAGGCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAGTTGACGGATCACCCCATTGATCAGGGCGTTCGCAAACGAACCCAGTATGACGACTCGCAACGCAAGAGACTCGCGCTGAGCATCGAGCGCGAGGA CGGTGGCGAACTTTCTTTGCCCATTGCCGTGGACATGCGCAGCCATGATGAAGAAGAGAACATCCAGCAGAACACGCTTCTAGCGGTAATGCCGCTGGCC AGACTTCCGGGTTACAACGCCTATAACGAAGCTCCCAAGGGCGCGTTGCCGCGCTCTGGTCGTATCTACGTATTCCAGAGCGGAAAGCTCTGGCGCGAGG TGCTATGCGACGGCCAGGGCAACATGAAGGATGTCGACCTTGCCCATTGGCGCAAGCAGGCCGAGAACAAGGCTCCTGCCGATGATCGTCGATCCGTTGG CAAGCAACAGCAGATTCTGTTGATCCCGATACTGGTACAGGGCCAATCCGTCGCCAATAACTACCTGATGGCCTACAGCGAAAAGCCTTGGACGTGGGAA
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFAPANQAHFNLTFDGFEHDFKVLEFQGREAISQPYRFDLELVSERPDLELESLLHRPAFLAFAPDGSGIHGLVHQAGQGESGKRLTRYRLTLVPQLAYL AHRSNQRIFQHLSVPQIVAQVLEEHGIQADAYRFQLGPVIYPPREYCVQYDESDLHFIQRLCEEEGIHYHFQHSTAGHVLVFGDDQTVFSTLATTSYQQD SGLVADQPVIQRFGLRLETRTSRVTRRDYDFEKPRLTMEAAFHSDFQPDLEDYDYPGRFSERARGKHLSQRALERHRHDYQLAEGESDQPRLLSGHFLDL GKHPRADWNQLWLLTEVLHEGKQPQVLEESVTSHVDTGDGFVQGYRNRFRAMPWNVPFRPALRHPKPRVLGSQTAVVTGPAGEEIHCDQYGRVRVQFHWD REGQSDDKTSCWLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANKTRTVFKTLSSPGGGGYNELRIEDRQGAEQIY LHAQRDWDENIEHDQKIRVGHERHDTVEANSHSEFRAEEHRTTHADRKSEIRASDHLTVGNSQHLKIGSGQFVEAGNEIHLSSGLKVVLEAGSELTFKAG GSFVKLDASGVTLVGPVVRVNSGGTPGSGAGAAPISPDLPKPADTAPVGEKTGTATINLPSLLPEKEGKGPQQLIVDVWGDPEQGGQVKLLDPEEGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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